4930500F04Rik Gene Detail

Summary

• Symbol
  4930500F04Rik
• Name
  RIKEN cDNA 4930500F04 gene
• Synonyms
  4931407C17Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922182
  NCBI Gene: 70969
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:149771212-149787745 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  519 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922182	lncRNA gene	Chr5:149771212-149787745 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015620	unclassified non-coding RNA gene	Chr5:155733014-155749563 (+)
A/J	MGP_AJ_G0015596	unclassified non-coding RNA gene	Chr5:149069728-149086388 (+)
AKR/J	MGP_AKRJ_G0015560	unclassified non-coding RNA gene	Chr5:153669769-153686783 (+)
BALB/cJ	MGP_BALBcJ_G0015558	unclassified non-coding RNA gene	Chr5:150326702-150343197 (+)
C3H/HeJ	MGP_C3HHeJ_G0015380	unclassified non-coding RNA gene	Chr5:154663716-154680278 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016012	unclassified non-coding RNA gene	Chr5:161426366-161442899 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013746	unclassified non-coding RNA gene	Chr5:143413691-143430291 (+)
CAST/EiJ	MGP_CASTEiJ_G0014936	unclassified non-coding RNA gene	Chr5:154296963-154314011 (+)
CBA/J	MGP_CBAJ_G0015361	unclassified non-coding RNA gene	Chr5:168243665-168261028 (+)
DBA/2J	MGP_DBA2J_G0015455	unclassified non-coding RNA gene	Chr5:148718866-148735355 (+)
FVB/NJ	MGP_FVBNJ_G0015462	unclassified non-coding RNA gene	Chr5:147970200-147986863 (+)
LP/J	MGP_LPJ_G0015536	unclassified non-coding RNA gene	Chr5:156411926-156428479 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015485	unclassified non-coding RNA gene	Chr5:170312855-170329384 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016054	unclassified non-coding RNA gene	Chr5:153618400-153634941 (+)
PWK/PhJ	MGP_PWKPhJ_G0014721	unclassified non-coding RNA gene	Chr5:147887344-147903921 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014509	unclassified non-coding RNA gene	Chr5:150915316-150931845 (+)
WSB/EiJ	MGP_WSBEiJ_G0015040	unclassified non-coding RNA gene	Chr5:154424902-154441449 (+)

Homology

• Gene Tree
  4930500F04Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000107214 (Evidence)
• NCBI Gene
  70969

Representative Sequences			Length	Strain/Species
genomic	70969	NCBI Gene Model | MGI Sequence Detail	16534	C57BL/6J
transcript	NR_045758	RefSeq | MGI Sequence Detail	576	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1918219

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930500F04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49927	Chr5:149771220-149771230 (+)	13 bp