4930481B07Rik Gene Detail

Summary

• Symbol
  4930481B07Rik
• Name
  RIKEN cDNA 4930481B07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922187
  NCBI Gene: 108168883
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:94922936-94927449 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922187	lncRNA gene	Chr3:94922936-94930526 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015511	unclassified non-coding RNA gene	Chr3:95695056-95700635 (+)
A/J	MGP_AJ_G0015488	unclassified non-coding RNA gene	Chr3:92752599-92757126 (+)
AKR/J	MGP_AKRJ_G0015451	unclassified non-coding RNA gene	Chr3:94889488-94894015 (+)
BALB/cJ	MGP_BALBcJ_G0015450	unclassified non-coding RNA gene	Chr3:92522412-92526941 (+)
C3H/HeJ	MGP_C3HHeJ_G0015273	unclassified non-coding RNA gene	Chr3:95162292-95166819 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015904	unclassified non-coding RNA gene	Chr3:99264644-99269157 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013640	unclassified non-coding RNA gene	Chr3:89111380-89116026 (+)
CAST/EiJ	MGP_CASTEiJ_G0014826	unclassified non-coding RNA gene	Chr3:94455384-94459885 (+)
CBA/J	MGP_CBAJ_G0015254	unclassified non-coding RNA gene	Chr3:102842311-102846838 (+)
DBA/2J	MGP_DBA2J_G0015348	unclassified non-coding RNA gene	Chr3:92046163-92050694 (+)
FVB/NJ	MGP_FVBNJ_G0015355	unclassified non-coding RNA gene	Chr3:90114841-90119368 (+)
LP/J	MGP_LPJ_G0015426	unclassified non-coding RNA gene	Chr3:96985710-96992612 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015379	unclassified non-coding RNA gene	Chr3:108988958-108993483 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015945	unclassified non-coding RNA gene	Chr3:94538481-94543008 (+)
PWK/PhJ	MGP_PWKPhJ_G0014614	unclassified non-coding RNA gene	Chr3:91916499-91921027 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014402	unclassified non-coding RNA gene	Chr3:92837054-92841194 (+)
WSB/EiJ	MGP_WSBEiJ_G0014933	unclassified non-coding RNA gene	Chr3:94929650-94934177 (+)

Homology

• Gene Tree
  4930481B07Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930481B07Rik
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000085956 (Evidence)
• NCBI Gene
  108168883

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085956	Ensembl Gene Model | MGI Sequence Detail	4514	C57BL/6J
transcript	ENSMUST00000243353	Ensembl | MGI Sequence Detail	1337	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4930481B07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30486	Chr3:94923032-94923062 (+)	111 bp
Tssr30487	Chr3:94923071-94923096 (+)	148 bp