4930505N22Rik Gene Detail

Summary

• Symbol
  4930505N22Rik
• Name
  RIKEN cDNA 4930505N22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922306
  NCBI Gene: 100174921
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:45986576-46001825 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM, cytoband D1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  576 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922306	lncRNA gene	Chr19:45986576-46001825 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005839	lincRNA gene	Chr19:45652097-45667115 (+)
A/J	MGP_AJ_G0005831	lincRNA gene	Chr19:43409849-43425146 (+)
AKR/J	MGP_AKRJ_G0005806	lincRNA gene	Chr19:44815482-44830687 (+)
BALB/cJ	MGP_BALBcJ_G0005810	lincRNA gene	Chr19:43463071-43478466 (+)
C3H/HeJ	MGP_C3HHeJ_G0005757	lincRNA gene	Chr19:44980535-44996645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005970	lincRNA gene	Chr19:46789252-46806850 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005694	lincRNA gene	Chr19:44753870-44769185 (+)
CBA/J	MGP_CBAJ_G0005742	lincRNA gene	Chr19:49137918-49154292 (+)
DBA/2J	MGP_DBA2J_G0005763	lincRNA gene	Chr19:43225699-43242329 (+)
FVB/NJ	MGP_FVBNJ_G0005789	lincRNA gene	Chr19:43003592-43018935 (+)
LP/J	MGP_LPJ_G0005843	lincRNA gene	Chr19:45556761-45575054 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005776	lincRNA gene	Chr19:48498406-48516935 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005967	lincRNA gene	Chr19:44910418-44934758 (+)
PWK/PhJ	MGP_PWKPhJ_G0005643	lincRNA gene	Chr19:43157541-43173501 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005556	lincRNA gene	Chr19:43578799-43594660 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  4930505N22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 4930505N22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097690 (Evidence)
• NCBI Gene
  100174921

Representative Sequences			Length	Strain/Species
genomic	100174921	NCBI Gene Model | MGI Sequence Detail	15250	C57BL/6J
transcript	NR_152221	RefSeq | MGI Sequence Detail	945	ZRU/MplStud
polypeptide	Q9CUK5	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for 4930505N22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156701	Chr19:45986570-45986581 (+)	0 bp
Tssr156702	Chr19:45986582-45986592 (+)	11 bp