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4930539J05Rik Gene Detail
Summary
  • Symbol
    4930539J05Rik
  • Name
    RIKEN cDNA 4930539J05 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1922477
    NCBI Gene: 319587
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:135141981-135144426 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 62.56 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922477
 lncRNA gene Chr3:135141970-135144467 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003843
 antisense lncRNA gene Chr3:138312774-138316216 (-)
A/J MGP_AJ_G0003823
 antisense lncRNA gene Chr3:133460015-133462471 (-)
AKR/J MGP_AKRJ_G0003800
 antisense lncRNA gene Chr3:136993958-136996413 (-)
BALB/cJ MGP_BALBcJ_G0003810
 antisense lncRNA gene Chr3:133316526-133318982 (-)
C3H/HeJ MGP_C3HHeJ_G0003757
 antisense lncRNA gene Chr3:137332449-137334905 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003953
 antisense lncRNA gene Chr3:143153891-143156347 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003454
 antisense lncRNA gene Chr3:128700959-128703378 (-)
CAST/EiJ MGP_CASTEiJ_G0003722
 antisense lncRNA gene Chr3:137066111-137068565 (-)
CBA/J MGP_CBAJ_G0003750
 antisense lncRNA gene Chr3:147993382-147995838 (-)
DBA/2J MGP_DBA2J_G0003764
 antisense lncRNA gene Chr3:132623977-132626432 (-)
FVB/NJ MGP_FVBNJ_G0003785
 antisense lncRNA gene Chr3:130113538-130115993 (-)
LP/J MGP_LPJ_G0003845
 antisense lncRNA gene Chr3:139753362-139755818 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003772
 antisense lncRNA gene Chr3:156114583-156117038 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003954
 antisense lncRNA gene Chr3:136532211-136535890 (-)
PWK/PhJ MGP_PWKPhJ_G0003677
 antisense lncRNA gene Chr3:132338286-132340810 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003622
 antisense lncRNA gene Chr3:134608970-134611444 (-)
WSB/EiJ MGP_WSBEiJ_G0003758
 antisense lncRNA gene Chr3:137319217-137321672 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    53
  • Chemically induced (other)
    1
  • Gene trapped
    51
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 4930539J05Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 319587 NCBI Gene Model | MGI Sequence Detail 2446 C57BL/6J ±  kb
transcript NR_030689 RefSeq | MGI Sequence Detail 510 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Diseases 1
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory