4930556N13Rik Gene Detail

Summary

• Symbol
  4930556N13Rik
• Name
  RIKEN cDNA 4930556N13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922535
  NCBI Gene: 75285
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:88742430-88772221 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  310 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922535	lncRNA gene	Chr11:88742430-88772221 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003033	antisense lncRNA gene	Chr11:90606083-90639059 (+)
A/J	MGP_AJ_G0003010	antisense lncRNA gene	Chr11:87082759-87112679 (+)
AKR/J	MGP_AKRJ_G0002991	antisense lncRNA gene	Chr11:89737329-89771991 (+)
BALB/cJ	MGP_BALBcJ_G0002997	antisense lncRNA gene	Chr11:87496945-87527580 (+)
C3H/HeJ	MGP_C3HHeJ_G0002953	antisense lncRNA gene	Chr11:89762761-89794208 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003139	antisense lncRNA gene	Chr11:93342977-93392921 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002678	antisense lncRNA gene	Chr11:84105982-84136213 (+)
CAST/EiJ	MGP_CASTEiJ_G0002923	antisense lncRNA gene	Chr11:90460772-90496414 (+)
CBA/J	MGP_CBAJ_G0002950	antisense lncRNA gene	Chr11:97329820-97374638 (+)
DBA/2J	MGP_DBA2J_G0002956	antisense lncRNA gene	Chr11:86634674-86665305 (+)
FVB/NJ	MGP_FVBNJ_G0002975	antisense lncRNA gene	Chr11:86139305-86169350 (+)
LP/J	MGP_LPJ_G0003032	antisense lncRNA gene	Chr11:91122256-91154508 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002963	antisense lncRNA gene	Chr11:97273190-97303348 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003143	antisense lncRNA gene	Chr11:89944495-89978285 (+)
PWK/PhJ	MGP_PWKPhJ_G0002882	antisense lncRNA gene	Chr11:87485382-87515945 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002827	antisense lncRNA gene	Chr11:89526584-89557743 (+)
WSB/EiJ	MGP_WSBEiJ_G0002953	antisense lncRNA gene	Chr11:89840935-89873362 (+)

Homology

• Gene Tree
  4930556N13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  9
• Targeted
  3
• Genomic Mutations
  4 involving 4930556N13Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092399 (Evidence)
• NCBI Gene
  75285

Representative Sequences			Length	Strain/Species
genomic	75285	NCBI Gene Model | MGI Sequence Detail	29792	C57BL/6J
transcript	NR_126433	RefSeq | MGI Sequence Detail	1034	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4930556N13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104052	Chr11:88742446-88742449 (+)	18 bp
Tssr104053	Chr11:88742467-88742478 (+)	43 bp
Tssr104054	Chr11:88755597-88755633 (+)	13,185 bp