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4930562A09Rik Gene Detail
Summary
  • Symbol
    4930562A09Rik
  • Name
    RIKEN cDNA 4930562A09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1922553
    NCBI Gene: 75303
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:116528737-116530859 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 56.40 cM, cytoband F
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922553
 lncRNA gene Chr5:116528737-116530859 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006777
 lincRNA gene Chr5:119383050-119385172 (-)
A/J MGP_AJ_G0006771
 lincRNA gene Chr5:114575027-114577149 (-)
AKR/J MGP_AKRJ_G0006741
 lincRNA gene Chr5:118260053-118262175 (-)
BALB/cJ MGP_BALBcJ_G0006747
 lincRNA gene Chr5:115984633-115986755 (-)
C3H/HeJ MGP_C3HHeJ_G0006692
 lincRNA gene Chr5:118776933-118779055 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006912
 lincRNA gene Chr5:123936590-123938712 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006167
 lincRNA gene Chr5:109350258-109352367 (-)
CAST/EiJ MGP_CASTEiJ_G0006615
 lincRNA gene Chr5:117749847-117751978 (-)
CBA/J MGP_CBAJ_G0006674
 lincRNA gene Chr5:128706648-128708770 (-)
DBA/2J MGP_DBA2J_G0006694
 lincRNA gene Chr5:114667839-114669967 (-)
FVB/NJ MGP_FVBNJ_G0006718
 lincRNA gene Chr5:113505827-113507945 (-)
LP/J MGP_LPJ_G0006778
 lincRNA gene Chr5:119904378-119906500 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006702
 lincRNA gene Chr5:132995302-132997424 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006914
 lincRNA gene Chr5:117766496-117768624 (-)
PWK/PhJ MGP_PWKPhJ_G0006554
 lincRNA gene Chr5:113332150-113334286 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006460
 lincRNA gene Chr5:115304371-115306442 (-)
WSB/EiJ MGP_WSBEiJ_G0006666
 lincRNA gene Chr5:118350233-118352353 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    67
  • Chemically induced (other)
    1
  • Gene trapped
    65
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 4930562A09Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086945 Ensembl Gene Model | MGI Sequence Detail 2123 C57BL/6J ±  kb
transcript ENSMUST00000153818 Ensembl | MGI Sequence Detail 734 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory