4930562D21Rik Gene Detail

Summary

• Symbol
  4930562D21Rik
• Name
  RIKEN cDNA 4930562D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922574
  NCBI Gene: 75324
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:79596058-79598189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 43.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922574	lncRNA gene	Chr9:79596058-79598189 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004652	antisense lncRNA gene	Chr9:80218271-80220402 (+)
A/J	MGP_AJ_G0004633	antisense lncRNA gene	Chr9:77481759-77483890 (+)
AKR/J	MGP_AKRJ_G0004616	antisense lncRNA gene	Chr9:79283232-79285363 (+)
BALB/cJ	MGP_BALBcJ_G0004617	antisense lncRNA gene	Chr9:77104562-77106693 (+)
C3H/HeJ	MGP_C3HHeJ_G0004566	antisense lncRNA gene	Chr9:79806430-79808561 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004767	antisense lncRNA gene	Chr9:82406969-82409100 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004217	antisense lncRNA gene	Chr9:76625055-76627170 (+)
CAST/EiJ	MGP_CASTEiJ_G0004522	antisense lncRNA gene	Chr9:80132863-80135000 (+)
CBA/J	MGP_CBAJ_G0004560	antisense lncRNA gene	Chr9:85333911-85336042 (+)
DBA/2J	MGP_DBA2J_G0004575	antisense lncRNA gene	Chr9:77090205-77092336 (+)
FVB/NJ	MGP_FVBNJ_G0004593	antisense lncRNA gene	Chr9:76308922-76311053 (+)
LP/J	MGP_LPJ_G0004656	antisense lncRNA gene	Chr9:80476504-80478635 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004581	antisense lncRNA gene	Chr9:86575981-86578112 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004766	antisense lncRNA gene	Chr9:79484330-79486461 (+)
PWK/PhJ	MGP_PWKPhJ_G0004476	antisense lncRNA gene	Chr9:77288695-77290826 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004416	antisense lncRNA gene	Chr9:79632760-79634900 (+)
WSB/EiJ	MGP_WSBEiJ_G0004565	antisense lncRNA gene	Chr9:79440424-79442555 (+)

Homology

• Gene Tree
  4930562D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930562D21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086608 (Evidence)
• NCBI Gene
  75324

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086608	Ensembl Gene Model | MGI Sequence Detail	2132	C57BL/6J
transcript	ENSMUST00000123894	Ensembl | MGI Sequence Detail	1750	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930562D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86304	Chr9:79596053-79596093 (+)	15 bp