4930555K19Rik Pseudogene Detail

Summary

• Symbol
  4930555K19Rik
• Name
  RIKEN cDNA 4930555K19 gene

• Feature Type
  pseudogene
• IDs
  MGI:1922612
  NCBI Gene: 100418302
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:41036883-41037264 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 15.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922612	pseudogene	Chr15:41036883-41038821 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011182	pseudogene	Chr15:39660862-39661035 (+)
A/J	MGP_AJ_G0011171	pseudogene	Chr15:38139700-38139870 (+)
AKR/J	MGP_AKRJ_G0011131	pseudogene	Chr15:39286986-39287156 (+)
BALB/cJ	MGP_BALBcJ_G0011138	pseudogene	Chr15:38225783-38225953 (+)
C3H/HeJ	MGP_C3HHeJ_G0011038	pseudogene	Chr15:39186849-39187022 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011436	pseudogene	Chr15:41212555-41212725 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010383	pseudogene	Chr2:28810778-28812031 (-)
CAST/EiJ	MGP_CASTEiJ_G0010860	pseudogene	Chr15:39684108-39684281 (+)
CBA/J	MGP_CBAJ_G0011019	pseudogene	Chr15:42635546-42635716 (+)
DBA/2J	MGP_DBA2J_G0011066	pseudogene	Chr15:37986447-37986617 (+)
FVB/NJ	MGP_FVBNJ_G0011066	pseudogene	Chr15:37319839-37320009 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011060	pseudogene	Chr15:45646343-45646513 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011411	pseudogene	Chr15:39478417-39478587 (+)
PWK/PhJ	MGP_PWKPhJ_G0010735	pseudogene	Chr15:38027850-38028023 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010555	pseudogene	Chr15:39095817-39095990 (+)
WSB/EiJ	MGP_WSBEiJ_G0010909	pseudogene	Chr15:39362664-39362837 (+)

Homology

• Gene Tree
  4930555K19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930555K19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  766
• Tissues
  56
• cDNA Data
  2
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000048559 (Evidence)
• NCBI Gene
  100418302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048559	Ensembl Gene Model | MGI Sequence Detail	382	C57BL/6J
transcript	ENSMUST00000060066	Ensembl | MGI Sequence Detail	382	Not Applicable
polypeptide	Q8CER6	UniProt | EBI | MGI Sequence Detail	56	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Developmental Gene Expression 3

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130

TSS for 4930555K19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131185	Chr15:41037055-41037083 (+)	186 bp