Fam236e MGI Mouse Gene Detail - MGI:1922693 - family with sequence similarity 236, member E

Symbol

Fam236e
Name

family with sequence similarity 236, member E
Synonyms

1700011M02Rik

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:1922693
NCBI Gene: 75443
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

ChrX:101952511-101953257 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome X, 45.79 cM
Mapping Data

1 experiment

SNPs within 2kb

111 from dbSNP Build 142
Strain Annotations

9

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922693	protein coding gene	ChrX:101952511-101953257 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035975	protein coding gene	ChrX:99302135-99302982 (-)
A/J	MGP_AJ_G0035961	protein coding gene	ChrX:99469908-99470653 (+)
AKR/J	MGP_AKRJ_G0035875	protein coding gene	ChrX:102153522-102154267 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0033305	protein coding gene	ChrX:97166517-97167255 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0035632	protein coding gene	ChrX:105669953-105670410 (+)
DBA/2J	MGP_DBA2J_G0035786	protein coding gene	ChrX:98686682-98687427 (+)
FVB/NJ	MGP_FVBNJ_G0035725	protein coding gene	ChrX:98042198-98046599 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0035754	protein coding gene	ChrX:109917680-109918425 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

FAM236A, family with sequence similarity 236 member A

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

FAM236A, family with sequence similarity 236 member A
Synonyms

DMRTC1-AS1, LINC00684
Links

HGNC:44268

NCBI Gene ID: 100129407

neXtProt AC: NX_A0A1B0GUQ0, NX_A0A1B0GV22

UniProt: A0A1B0GUQ0
Chr Location

Xq13.1; chrX:72938163-72938958 (+) GRCh38

Human Ortholog

FAM236B, family with sequence similarity 236 member B
Links

HGNC:52640

NCBI Gene ID: 100132304

neXtProt AC: NX_A0A1B0GUQ0, NX_A0A1B0GV22

UniProt: A0A1B0GV22
Chr Location

Xq13.1; chrX:72781865-72782660 (-) GRCh38

Human Ortholog

FAM236C, family with sequence similarity 236 member C
Synonyms

FAM236D
Links

HGNC:52641

NCBI Gene ID: 109729126

UniProt: P0DP71
Chr Location

Xq13.1; chrX:72912615-72913401 (+) GRCh38

Human Ortholog

FAM236D, family with sequence similarity 236 member D
Synonyms

FAM236C
Links

HGNC:52642

NCBI Gene ID: 105373251

neXtProt AC: NX_A0A1B0GTK5, NX_P0DP71

UniProt: A0A1B0GTK5
Chr Location

chrX:72807425-72808210 (-) GRCh38

MGI Vertebrate Homology

Fam236e stringent orthology
4 human;1 mouse
HCOP

vertebrate homology predictions: FAM236A, FAM236B, FAM236C, FAM236D
Gene Tree

Fam236e

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

1
Targeted

1
Find Mice (IMSR)

1 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

16
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000079476 (Evidence)
NCBI Gene

75443

			Length	Strain/Species	Flank
genomic	75443	NCBI Gene Model \| MGI Sequence Detail	747	C57BL/6J	± kb
transcript	NR_073044	RefSeq \| MGI Sequence Detail	420	C57BL/6
polypeptide	B1AX35	UniProt \| EBI \| MGI Sequence Detail	88	Not Applicable

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UniProt

1 Sequence

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All nucleic 4

cDNA 4

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MGI:7443969

Summaries

All 14

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Fam236e:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5660	ChrX:101952505-101952516 (+)	0 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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