1700016P03Rik Gene Detail

Summary

• Symbol
  1700016P03Rik
• Name
  RIKEN cDNA 1700016P03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922792
  NCBI Gene: 118567915
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:75062834-75066318 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922792	lncRNA gene	Chr11:75062834-75068464 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015184	unclassified non-coding RNA gene	Chr11:75904171-75909233 (+)
A/J	MGP_AJ_G0015158	unclassified non-coding RNA gene	Chr11:73085116-73090172 (+)
AKR/J	MGP_AKRJ_G0015121	unclassified non-coding RNA gene	Chr11:75300016-75305102 (+)
BALB/cJ	MGP_BALBcJ_G0015120	unclassified non-coding RNA gene	Chr11:73455803-73460871 (+)
C3H/HeJ	MGP_C3HHeJ_G0014944	unclassified non-coding RNA gene	Chr11:75313128-75318947 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015577	unclassified non-coding RNA gene	Chr11:78279015-78285537 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013320	unclassified non-coding RNA gene	Chr11:70101646-70106922 (+)
CAST/EiJ	MGP_CASTEiJ_G0014497	unclassified non-coding RNA gene	Chr11:75701428-75706483 (+)
CBA/J	MGP_CBAJ_G0014923	unclassified non-coding RNA gene	Chr11:81716192-81721253 (+)
DBA/2J	MGP_DBA2J_G0015016	unclassified non-coding RNA gene	Chr11:72691088-72696224 (+)
FVB/NJ	MGP_FVBNJ_G0015028	unclassified non-coding RNA gene	Chr11:72252398-72258824 (+)
LP/J	MGP_LPJ_G0015097	unclassified non-coding RNA gene	Chr11:76496972-76503401 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015054	unclassified non-coding RNA gene	Chr11:82302454-82307550 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015616	unclassified non-coding RNA gene	Chr11:75485702-75490768 (+)
PWK/PhJ	MGP_PWKPhJ_G0014289	unclassified non-coding RNA gene	Chr11:73387407-73392479 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014076	unclassified non-coding RNA gene	Chr11:75056789-75061822 (+)
WSB/EiJ	MGP_WSBEiJ_G0014600	unclassified non-coding RNA gene	Chr11:75304685-75309745 (+)

Homology

• Gene Tree
  1700016P03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  2 involving 1700016P03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3

• Ensembl
  ENSMUSG00000085609 (Evidence)
• NCBI Gene
  118567915

Representative Sequences			Length	Strain/Species
genomic	118567915	NCBI Gene Model | MGI Sequence Detail	3485	C57BL/6J
transcript	NR_190394	RefSeq | MGI Sequence Detail	868	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 17

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 1700016P03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102928	Chr11:75063270-75063281 (+)	442 bp
Tssr102929	Chr11:75063297-75063304 (+)	467 bp
Tssr102930	Chr11:75063379-75063395 (+)	553 bp