Atxn7l1os2 Gene Detail

Summary

• Symbol
  Atxn7l1os2
• Name
  ataxin 7-like 1, opposite strand 2
• Synonyms
  4930556N08Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1923086
  NCBI Gene: 75836
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:33408242-33444759 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 14.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1011 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923086	antisense lncRNA gene	Chr12:33408242-33444759 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015229	unclassified non-coding RNA gene	Chr12:31420881-31458524 (-)
A/J	MGP_AJ_G0015203	unclassified non-coding RNA gene	Chr12:30486051-30522538 (-)
AKR/J	MGP_AKRJ_G0015166	unclassified non-coding RNA gene	Chr12:31474348-31510802 (-)
BALB/cJ	MGP_BALBcJ_G0015165	unclassified non-coding RNA gene	Chr12:30705527-30742206 (-)
C3H/HeJ	MGP_C3HHeJ_G0014989	unclassified non-coding RNA gene	Chr12:31326728-31365219 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015622	unclassified non-coding RNA gene	Chr12:32360008-32397600 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013364	unclassified non-coding RNA gene	Chr12:29767282-29806670 (-)
CAST/EiJ	MGP_CASTEiJ_G0014542	unclassified non-coding RNA gene	Chr12:26380314-26420703 (-)
CBA/J	MGP_CBAJ_G0014968	unclassified non-coding RNA gene	Chr12:33399034-33436168 (-)
DBA/2J	MGP_DBA2J_G0015061	unclassified non-coding RNA gene	Chr12:30303604-30340143 (-)
FVB/NJ	MGP_FVBNJ_G0015072	unclassified non-coding RNA gene	Chr12:30095551-30131956 (-)
LP/J	MGP_LPJ_G0015142	unclassified non-coding RNA gene	Chr12:31498242-31535711 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015099	unclassified non-coding RNA gene	Chr12:33014724-33054261 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015661	unclassified non-coding RNA gene	Chr12:30975097-31012982 (-)
PWK/PhJ	MGP_PWKPhJ_G0014334	unclassified non-coding RNA gene	Chr12:25078652-25115792 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014121	unclassified non-coding RNA gene	Chr12:25616639-25656020 (-)
WSB/EiJ	MGP_WSBEiJ_G0014645	unclassified non-coding RNA gene	Chr12:31221641-31258334 (-)

Homology

• Gene Tree
  Atxn7l1os2
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085664 (Evidence)
• NCBI Gene
  75836

Representative Sequences			Length	Strain/Species
genomic	75836	NCBI Gene Model | MGI Sequence Detail	36518	C57BL/6J
transcript	NR_131031	RefSeq | MGI Sequence Detail	2019	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573