4930579H20Rik Gene Detail

Summary

• Symbol
  4930579H20Rik
• Name
  RIKEN cDNA 4930579H20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923105
  NCBI Gene: 75855
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:27265862-27273221 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  426 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923105	lncRNA gene	Chr10:27265862-27273221 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002845	antisense lncRNA gene	Chr10:25514443-25521803 (+)
A/J	MGP_AJ_G0002822	antisense lncRNA gene	Chr10:24722998-24730362 (+)
AKR/J	MGP_AKRJ_G0002802	antisense lncRNA gene	Chr10:25152199-25159560 (+)
BALB/cJ	MGP_BALBcJ_G0002809	antisense lncRNA gene	Chr10:24846311-24853660 (+)
C3H/HeJ	MGP_C3HHeJ_G0002766	antisense lncRNA gene	Chr10:25373124-25380484 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002951	antisense lncRNA gene	Chr10:26291778-26299142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002496	antisense lncRNA gene	Chr10:23328976-23336821 (+)
CAST/EiJ	MGP_CASTEiJ_G0002738	antisense lncRNA gene	Chr10:25378433-25385745 (+)
CBA/J	MGP_CBAJ_G0002761	antisense lncRNA gene	Chr10:27575993-27583363 (+)
DBA/2J	MGP_DBA2J_G0002768	antisense lncRNA gene	Chr10:24431275-24438636 (+)
FVB/NJ	MGP_FVBNJ_G0002788	antisense lncRNA gene	Chr10:24109418-24116772 (+)
LP/J	MGP_LPJ_G0002844	antisense lncRNA gene	Chr10:25502247-25509599 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002778	antisense lncRNA gene	Chr10:27608227-27621398 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002955	antisense lncRNA gene	Chr10:25025251-25032613 (+)
PWK/PhJ	MGP_PWKPhJ_G0002696	antisense lncRNA gene	Chr10:24249653-24257060 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002646	antisense lncRNA gene	Chr10:24862325-24869735 (+)
WSB/EiJ	MGP_WSBEiJ_G0002767	antisense lncRNA gene	Chr10:25159589-25166938 (+)

Homology

• Gene Tree
  4930579H20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930579H20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101636 (Evidence)
• NCBI Gene
  75855

Representative Sequences			Length	Strain/Species
genomic	75855	NCBI Gene Model | MGI Sequence Detail	7360	C57BL/6J
transcript	NR_131034	RefSeq | MGI Sequence Detail	1516	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573