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5033417F24Rik Gene Detail
Summary
  • Symbol
    5033417F24Rik
  • Name
    RIKEN cDNA 5033417F24 gene
  • Synonyms
    6330419D11Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923245
    NCBI Gene: 75995
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:92836100-92838486 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 46.60 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    126 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923245
 lncRNA gene Chr1:92836100-92838486 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002721
 antisense lncRNA gene Chr1:94513615-94516001 (-)
A/J MGP_AJ_G0002697
 antisense lncRNA gene Chr1:91128373-91130759 (-)
AKR/J MGP_AKRJ_G0002678
 antisense lncRNA gene Chr1:93818273-93820659 (-)
BALB/cJ MGP_BALBcJ_G0002684
 antisense lncRNA gene Chr1:91299053-91301439 (-)
C3H/HeJ MGP_C3HHeJ_G0002643
 antisense lncRNA gene Chr1:94068804-94071190 (-)
C57BL/6NJ MGP_C57BL6NJ_G0002827
 antisense lncRNA gene Chr1:98109567-98111953 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002375
 antisense lncRNA gene Chr1:85375904-85378289 (-)
CAST/EiJ MGP_CASTEiJ_G0002615
 antisense lncRNA gene Chr1:93392266-93394634 (-)
CBA/J MGP_CBAJ_G0002638
 antisense lncRNA gene Chr1:101280973-101283359 (-)
DBA/2J MGP_DBA2J_G0002644
 antisense lncRNA gene Chr1:90325046-90327432 (-)
FVB/NJ MGP_FVBNJ_G0002664
 antisense lncRNA gene Chr1:89392914-89395300 (-)
LP/J MGP_LPJ_G0002723
 antisense lncRNA gene Chr1:95696099-95698485 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002654
 antisense lncRNA gene Chr1:104414254-104416640 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0002832
 antisense lncRNA gene Chr1:93840696-93843082 (-)
PWK/PhJ MGP_PWKPhJ_G0002573
 antisense lncRNA gene Chr1:89758764-89761150 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002525
 antisense lncRNA gene Chr1:92779684-92782069 (-)
WSB/EiJ MGP_WSBEiJ_G0002645
 antisense lncRNA gene Chr1:93646682-93649067 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 5033417F24Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 75995 NCBI Gene Model | MGI Sequence Detail 2387 C57BL/6J ±  kb
transcript NR_138577 RefSeq | MGI Sequence Detail 1886 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
Other
Accession IDs
less
MGI:1918014
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory