5830417I10Rik Pseudogene Detail

Summary

• Symbol
  5830417I10Rik
• Name
  RIKEN cDNA 5830417I10 gene
• Synonyms
  3632445O20Rik

• Feature Type
  pseudogene
• IDs
  MGI:1923272
  NCBI Gene: 100302730
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:88682523-88732894 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.97 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  947 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923272	pseudogene	Chr3:88682523-88736678 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040290	pseudogene	Chr3:85950940-86137335 (+)
AKR/J	MGP_AKRJ_G0040232	pseudogene	Chr3:88074148-88128106 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040042	pseudogene	Chr3:83698994-83777062 (+)
LP/J	MGP_LPJ_G0040138	pseudogene	Chr3:89975539-90062516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040039	pseudogene	Chr3:101660159-101743645 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038698	pseudogene	Chr3:85225676-85300425 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  5830417I10Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  7
• Radiation induced
  1
• Genomic Mutations
  2 involving 5830417I10Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  24 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• UniProt
  4

• Ensembl
  ENSMUSG00000078684 (Evidence)
• NCBI Gene
  100302730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078684	Ensembl Gene Model | MGI Sequence Detail	50372	C57BL/6J
transcript	ENSMUST00000135913	Ensembl | MGI Sequence Detail	6190	Not Applicable
polypeptide	Q6PB37	UniProt | EBI | MGI Sequence Detail	483	Not Applicable

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR003822 Paired amphipathic helix
  IPR036600 Paired amphipathic helix superfamily
  IPR052435 YY1-Associated Transcriptional Regulator

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1921279, MGI:3034310

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426