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5830454E08Rik Gene Detail
Summary
  • Symbol
    5830454E08Rik
  • Name
    RIKEN cDNA 5830454E08 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923350
    NCBI Gene: 76100
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr9:120406397-120407139 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 71.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    180 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923350
 lncRNA gene Chr9:120406397-120407140 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035438
 protein coding gene Chr9:123442285-123443011 (+)
A/J MGP_AJ_G0035419
 protein coding gene Chr9:118796647-118797373 (+)
AKR/J MGP_AKRJ_G0035352
 protein coding gene Chr9:121919260-121919993 (+)
BALB/cJ MGP_BALBcJ_G0035415
 protein coding gene Chr9:118696650-118697376 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0035938
 protein coding gene Chr9:126801382-126802108 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032820
 protein coding gene Chr9:115986231-115986997 (+)
CAST/EiJ MGP_CASTEiJ_G0034427
 protein coding gene Chr9:122430192-122430931 (+)
CBA/J MGP_CBAJ_G0035090
 protein coding gene Chr9:131501470-131502203 (+)
DBA/2J MGP_DBA2J_G0035249
 protein coding gene Chr9:118254042-118254775 (+)
FVB/NJ MGP_FVBNJ_G0035196
 protein coding gene Chr9:117143067-117143793 (+)
LP/J MGP_LPJ_G0035328
 protein coding gene Chr9:123783504-123784230 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035237
 protein coding gene Chr9:132473709-132474435 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035957
 protein coding gene Chr9:122335859-122336585 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034547
 protein coding gene Chr9:122210907-122211641 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76100 NCBI Gene Model | MGI Sequence Detail 743 C57BL/6J ±  kb
transcript NR_073359 RefSeq | MGI Sequence Detail 743 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 14
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/22/2024
MGI 6.24 		The Jackson Laboratory