5830487J09Rik Gene Detail

Summary

• Symbol
  5830487J09Rik
• Name
  RIKEN cDNA 5830487J09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923368
  NCBI Gene: 76118
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:123504535-123506982 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923368	lncRNA gene	Chr5:123504535-123506982 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015612	unclassified non-coding RNA gene	Chr5:127101509-127103922 (+)
A/J	MGP_AJ_G0015588	unclassified non-coding RNA gene	Chr5:121825843-121828288 (+)
AKR/J	MGP_AKRJ_G0015552	unclassified non-coding RNA gene	Chr5:125756561-125758937 (+)
BALB/cJ	MGP_BALBcJ_G0015550	unclassified non-coding RNA gene	Chr5:123151560-123153868 (+)
C3H/HeJ	MGP_C3HHeJ_G0015372	unclassified non-coding RNA gene	Chr5:126367777-126372851 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016004	unclassified non-coding RNA gene	Chr5:132007951-132012336 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013739	unclassified non-coding RNA gene	Chr5:116364617-116367053 (+)
CAST/EiJ	MGP_CASTEiJ_G0014928	unclassified non-coding RNA gene	Chr5:125457572-125460006 (+)
CBA/J	MGP_CBAJ_G0015353	unclassified non-coding RNA gene	Chr5:137195939-137198314 (+)
DBA/2J	MGP_DBA2J_G0015447	unclassified non-coding RNA gene	Chr5:121843779-121846402 (+)
FVB/NJ	MGP_FVBNJ_G0015454	unclassified non-coding RNA gene	Chr5:120868380-120870705 (+)
LP/J	MGP_LPJ_G0015528	unclassified non-coding RNA gene	Chr5:127628970-127631333 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015477	unclassified non-coding RNA gene	Chr5:140840122-140843259 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016046	unclassified non-coding RNA gene	Chr5:125345277-125347723 (+)
PWK/PhJ	MGP_PWKPhJ_G0014713	unclassified non-coding RNA gene	Chr5:120642439-120644993 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014501	unclassified non-coding RNA gene	Chr5:123005080-123007534 (+)
WSB/EiJ	MGP_WSBEiJ_G0015032	unclassified non-coding RNA gene	Chr5:125992667-125994999 (+)

Homology

• Gene Tree
  5830487J09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 5830487J09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000104830 (Evidence)
• NCBI Gene
  76118

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104830	Ensembl Gene Model | MGI Sequence Detail	2448	C57BL/6J
transcript	ENSMUST00000200118	Ensembl | MGI Sequence Detail	1921	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573