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6230400D17Rik Gene Detail
Summary
  • Symbol
    6230400D17Rik
  • Name
    RIKEN cDNA 6230400D17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923383
    NCBI Gene: 76133
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:20752080-20753167 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 11.53 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923383
 lncRNA gene Chr14:20737301-20753167 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005520
 lincRNA gene Chr14:13452875-13469564 (-)
A/J MGP_AJ_G0005506
 lincRNA gene Chr14:13143613-13159321 (-)
AKR/J MGP_AKRJ_G0005485
 lincRNA gene Chr14:13669334-13685037 (-)
BALB/cJ MGP_BALBcJ_G0005488
 lincRNA gene Chr14:13247224-13263168 (-)
C3H/HeJ MGP_C3HHeJ_G0005435
 lincRNA gene Chr14:13608652-13624378 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005643
 lincRNA gene Chr14:13953826-13970828 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005017
 lincRNA gene Chr14:13460482-13475803 (-)
CAST/EiJ MGP_CASTEiJ_G0005377
 lincRNA gene Chr14:13373578-13389216 (-)
CBA/J MGP_CBAJ_G0005424
 lincRNA gene Chr14:14664158-14679939 (-)
DBA/2J MGP_DBA2J_G0005440
 lincRNA gene Chr14:12967474-12983802 (-)
FVB/NJ MGP_FVBNJ_G0005466
 lincRNA gene Chr14:12861165-12876871 (-)
LP/J MGP_LPJ_G0005524
 lincRNA gene Chr14:13680920-13697564 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005450
 lincRNA gene Chr14:14441858-14457581 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005643
 lincRNA gene Chr14:13461083-13476827 (-)
PWK/PhJ MGP_PWKPhJ_G0005328
 lincRNA gene Chr14:12537136-12553362 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005246
 lincRNA gene Chr14:13254936-13271682 (-)
WSB/EiJ MGP_WSBEiJ_G0005427
 lincRNA gene Chr14:13442087-13459386 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76133 NCBI Gene Model | MGI Sequence Detail 1088 C57BL/6J ±  kb
transcript NR_029446 RefSeq | MGI Sequence Detail 1088 C57BL/6  
polypeptide Q9CXD7 UniProt | EBI | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory