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6330562C20Rik Gene Detail
Summary
  • Symbol
    6330562C20Rik
  • Name
    RIKEN cDNA 6330562C20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923443
    NCBI Gene: 76193
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95214387-95222446 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    259 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923443
 lncRNA gene Chr3:95214387-95222446 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003789
 antisense lncRNA gene Chr3:96029957-96039477 (-)
A/J MGP_AJ_G0003769
 antisense lncRNA gene Chr3:93049443-93058477 (-)
AKR/J MGP_AKRJ_G0003746
 antisense lncRNA gene Chr3:95199455-95213650 (-)
BALB/cJ MGP_BALBcJ_G0003758
 antisense lncRNA gene Chr3:92827141-92834995 (-)
C3H/HeJ MGP_C3HHeJ_G0003704
 antisense lncRNA gene Chr3:95482797-95490640 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003899
 antisense lncRNA gene Chr3:99588403-99596373 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003403
 antisense lncRNA gene Chr3:89413315-89421455 (-)
CAST/EiJ MGP_CASTEiJ_G0003668
 antisense lncRNA gene Chr3:94776481-94784548 (-)
CBA/J MGP_CBAJ_G0003700
 antisense lncRNA gene Chr3:103205003-103217603 (-)
DBA/2J MGP_DBA2J_G0003710
 antisense lncRNA gene Chr3:92341155-92349017 (-)
FVB/NJ MGP_FVBNJ_G0003731
 antisense lncRNA gene Chr3:90417091-90424961 (-)
LP/J MGP_LPJ_G0003790
 antisense lncRNA gene Chr3:97329211-97344714 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003718
 antisense lncRNA gene Chr3:109308974-109317039 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003899
 antisense lncRNA gene Chr3:94855315-94863652 (-)
PWK/PhJ MGP_PWKPhJ_G0003624
 antisense lncRNA gene Chr3:92223462-92232633 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003567
 antisense lncRNA gene Chr3:93152571-93160754 (-)
WSB/EiJ MGP_WSBEiJ_G0003704
 antisense lncRNA gene Chr3:95242668-95251710 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    5
  • Genomic Mutations
    1 involving 6330562C20Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    25
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000093424 Ensembl Gene Model | MGI Sequence Detail 8060 C57BL/6J ±  kb
transcript ENSMUST00000098867 Ensembl | MGI Sequence Detail 784 Not Applicable  
polypeptide Q3UMJ3 UniProt | EBI | MGI Sequence Detail 144 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory