6530401F13Rik Gene Detail

Summary

• Symbol
  6530401F13Rik
• Name
  RIKEN cDNA 6530401F13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923491
  NCBI Gene: 76241
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:81579710-81604232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 37.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  453 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923491	lncRNA gene	Chr12:81579710-81604232 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015234	unclassified non-coding RNA gene	Chr12:82003410-82029646 (+)
A/J	MGP_AJ_G0015208	unclassified non-coding RNA gene	Chr12:79011295-79033374 (+)
AKR/J	MGP_AKRJ_G0015171	unclassified non-coding RNA gene	Chr12:81156559-81178052 (+)
BALB/cJ	MGP_BALBcJ_G0015170	unclassified non-coding RNA gene	Chr12:79237929-79257806 (+)
C3H/HeJ	MGP_C3HHeJ_G0014994	unclassified non-coding RNA gene	Chr12:81613526-81641278 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015627	unclassified non-coding RNA gene	Chr12:84395273-84416504 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013369	unclassified non-coding RNA gene	Chr12:75967905-75999432 (+)
CAST/EiJ	MGP_CASTEiJ_G0014547	unclassified non-coding RNA gene	Chr12:76496761-76528052 (+)
CBA/J	MGP_CBAJ_G0014973	unclassified non-coding RNA gene	Chr12:87660894-87685862 (+)
DBA/2J	MGP_DBA2J_G0015066	unclassified non-coding RNA gene	Chr12:78588688-78611199 (+)
FVB/NJ	MGP_FVBNJ_G0015077	unclassified non-coding RNA gene	Chr12:77437788-77457921 (+)
LP/J	MGP_LPJ_G0015147	unclassified non-coding RNA gene	Chr12:81912794-81933582 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015104	unclassified non-coding RNA gene	Chr12:90669390-90695837 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015666	unclassified non-coding RNA gene	Chr12:80685548-80707759 (+)
PWK/PhJ	MGP_PWKPhJ_G0014339	unclassified non-coding RNA gene	Chr12:72991309-73017594 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014126	unclassified non-coding RNA gene	Chr12:75192304-75227914 (+)
WSB/EiJ	MGP_WSBEiJ_G0014650	unclassified non-coding RNA gene	Chr12:81333748-81353448 (+)

Homology

• Gene Tree
  6530401F13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 6530401F13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000091947 (Evidence)
• NCBI Gene
  76241

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091947	Ensembl Gene Model | MGI Sequence Detail	24523	C57BL/6J
transcript	ENSMUST00000166971	Ensembl | MGI Sequence Detail	1090	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 6530401F13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114196	Chr12:81579724-81579764 (+)	34 bp