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Slamf9 Gene Detail
Summary
  • Symbol
    Slamf9
  • Name
    SLAM family member 9
  • Synonyms
    2310026I04Rik, Cd2f10, CD2F-10, CD84-H1, SF2001
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923692
    NCBI Gene: 98365
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:172302927-172305976 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 79.85 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    172 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923692
 protein coding gene Chr1:172302925-172306142 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016788
 protein coding gene Chr1:178344601-178347816 (+)
A/J MGP_AJ_G0016767
 protein coding gene Chr1:171053617-171056832 (+)
AKR/J MGP_AKRJ_G0016733
 protein coding gene Chr1:176216829-176220044 (+)
BALB/cJ MGP_BALBcJ_G0016728
 protein coding gene Chr1:171591734-171594949 (+)
C3H/HeJ MGP_C3HHeJ_G0016552
 protein coding gene Chr1:176790772-176793987 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017190
 protein coding gene Chr1:184270725-184273942 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014896
 protein coding gene Chr1:162746366-162749575 (+)
CAST/EiJ MGP_CASTEiJ_G0016132
 protein coding gene Chr1:176159542-176162762 (+)
CBA/J MGP_CBAJ_G0016526
 protein coding gene Chr1:190816486-190819701 (+)
DBA/2J MGP_DBA2J_G0016633
 protein coding gene Chr1:169979185-169982400 (+)
FVB/NJ MGP_FVBNJ_G0016630
 protein coding gene Chr1:168234925-168238145 (+)
LP/J MGP_LPJ_G0016704
 protein coding gene Chr1:179429380-179432595 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016657
 protein coding gene Chr1:198050388-198053603 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017226
 protein coding gene Chr1:176086501-176089721 (+)
PWK/PhJ MGP_PWKPhJ_G0015918
 protein coding gene Chr1:169360588-169363808 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015700
 protein coding gene Chr1:175042916-175046130 (+)
WSB/EiJ MGP_WSBEiJ_G0016194
 protein coding gene Chr1:176237714-176240929 (+)



Homology
more
  • Human Ortholog
    SLAMF9, SLAM family member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLAMF9, SLAM family member 9
  • Synonyms
    CD2F-10, CD2F10, CD84-H1, CD84H1, SF2001
  • Links
    NCBI Gene ID: 89886
    neXtProt AC: NX_Q96A28
    UniProt: Q96A28

  • Chr Location
    1q23.2; chr1:159951492-159983984 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit increased plasmacytoid dendrtic cell numbrs in the lymph nodes and delayed onset of experimental autoimmune encephalomyelitis with milder disease.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    4
  • cDNA Data
    13
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 98365 NCBI Gene Model | MGI Sequence Detail 3050 C57BL/6J ±  kb
transcript NM_029612 RefSeq | MGI Sequence Detail 1152 C57BL/6  
polypeptide Q9D780 UniProt | EBI | MGI Sequence Detail 285 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 13
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138260
References
more
  • Summaries
    All 45
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 16
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory