2310016D23Rik Gene Detail

Summary

• Symbol
  2310016D23Rik
• Name
  RIKEN cDNA 2310016D23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923693
  NCBI Gene: 76443
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:60817899-60842949 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 30.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923693	lncRNA gene	Chr1:60817620-60842949 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004843	lincRNA gene	Chr1:60860350-60882379 (+)
A/J	MGP_AJ_G0004824	lincRNA gene	Chr1:58697625-58717961 (+)
AKR/J	MGP_AKRJ_G0004803	lincRNA gene	Chr1:60352293-60371344 (+)
BALB/cJ	MGP_BALBcJ_G0004806	lincRNA gene	Chr1:58730490-58755191 (+)
C3H/HeJ	MGP_C3HHeJ_G0004754	lincRNA gene	Chr1:60591036-60608180 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004956	lincRNA gene	Chr1:63222197-63247116 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004385	lincRNA gene	Chr1:54904041-54922654 (+)
CAST/EiJ	MGP_CASTEiJ_G0004708	lincRNA gene	Chr1:59799149-59820889 (+)
CBA/J	MGP_CBAJ_G0004747	lincRNA gene	Chr1:65209068-65236706 (+)
DBA/2J	MGP_DBA2J_G0004765	lincRNA gene	Chr1:58129812-58153480 (+)
FVB/NJ	MGP_FVBNJ_G0004785	lincRNA gene	Chr1:57418738-57443061 (+)
LP/J	MGP_LPJ_G0004844	lincRNA gene	Chr1:61733351-61756055 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004769	lincRNA gene	Chr1:68101151-68132298 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004960	lincRNA gene	Chr1:60280971-60305606 (+)
PWK/PhJ	MGP_PWKPhJ_G0004661	lincRNA gene	Chr1:57472027-57491138 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004587	lincRNA gene	Chr1:59785354-59802694 (+)
WSB/EiJ	MGP_WSBEiJ_G0004752	lincRNA gene	Chr1:59971300-59993346 (+)

Homology

• Gene Tree
  2310016D23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  7
• Radiation induced
  1
• Genomic Mutations
  2 involving 2310016D23Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000085965 (Evidence)
• NCBI Gene
  76443

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085965	Ensembl Gene Model | MGI Sequence Detail	25051	C57BL/6J
transcript	ENSMUST00000130082	Ensembl | MGI Sequence Detail	485	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 2310016D23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6945	Chr1:60817902-60817907 (+)	6 bp