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Trappc9 Gene Detail
Summary
  • Symbol
    Trappc9
  • Name
    trafficking protein particle complex 9
  • Synonyms
    1810044A24Rik, 2900005P22Rik, 4632408O18Rik, Nibp, TRS130
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923760
    NCBI Gene: 76510
  • Alliance
    gene page
  • Transcription Start Sites
    15 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:72461469-72933053 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 33.70 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12638 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923760
 protein coding gene Chr15:72461469-72933086 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021917
 protein coding gene Chr15:72272604-72767953 (-)
A/J MGP_AJ_G0021876
 protein coding gene Chr15:69695708-70173353 (-)
AKR/J MGP_AKRJ_G0021858
 protein coding gene Chr15:71479443-71967333 (-)
BALB/cJ MGP_BALBcJ_G0021883
 protein coding gene Chr15:69704912-70190681 (-)
C3H/HeJ MGP_C3HHeJ_G0021656
 protein coding gene Chr15:71623651-72121147 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022322
 protein coding gene Chr15:75060298-75562900 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019859
 protein coding gene Chr15:66151556-66633094 (-)
CAST/EiJ MGP_CASTEiJ_G0021175
 protein coding gene Chr15:72376182-72866337 (-)
CBA/J MGP_CBAJ_G0021622
 protein coding gene Chr15:77508727-78014820 (-)
DBA/2J MGP_DBA2J_G0021747
 protein coding gene Chr15:69316902-69793520 (-)
FVB/NJ MGP_FVBNJ_G0021729
 protein coding gene Chr15:68313144-68784862 (-)
LP/J MGP_LPJ_G0021819
 protein coding gene Chr15:72315696-72799270 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021752
 protein coding gene Chr15:82901161-83407926 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022344
 protein coding gene Chr15:71882557-72372106 (-)
PWK/PhJ MGP_PWKPhJ_G0020916
 protein coding gene Chr15:69391089-69877667 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020757
 protein coding gene Chr15:71749108-72247322 (-)
WSB/EiJ MGP_WSBEiJ_G0021227
 protein coding gene Chr15:71848917-72360404 (-)



Homology
more
  • Human Ortholog
    TRAPPC9, trafficking protein particle complex subunit 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC9, trafficking protein particle complex subunit 9
  • Synonyms
    IBP, IKBKBBP, MRT13, NIBP, T1, TRS120
  • Links
    NCBI Gene ID: 83696
    neXtProt AC: NX_Q96Q05
    UniProt: Q96Q05

  • Chr Location
    8q24.3; chr8:139727725-140458579 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Trappc9 mouse models; 1 with human TRAPPC9 associations

Human Disease Mouse Models
      
IDs
 View 2 models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    77 phenotypes from 2 alleles in 3 genetic backgrounds
    40 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice exhibit decreased brain size, brain structural malformations, a wide range of behavioral deficits, and increased body weight.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    725
  • Tissues
    16
  • cDNA Data
    15
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000047921 Ensembl Gene Model | MGI Sequence Detail 471585 C57BL/6J ±  kb
    transcript ENSMUST00000089770 Ensembl | MGI Sequence Detail 4048 Not Applicable  
    polypeptide ENSMUSP00000087202 Ensembl | MGI Sequence Detail 1139 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 16

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1920139, MGI:2443037
    References
    more
    • Summaries
      All 71
      Developmental Gene Expression 4
      Diseases 3
      Gene Ontology 8
      Phenotypes 40
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345626 Aljuraysi S, et al., Microcephaly with a disproportionate hippocampal reduction, stem cell loss and neuronal lipid droplet symptoms in Trappc9 KO mice. Neurobiol Dis. 2024 Mar;192:106431
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory