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Wdr38 Gene Detail
Summary
  • Symbol
    Wdr38
  • Name
    WD repeat domain 38
  • Synonyms
    1700123D08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923896
    NCBI Gene: 76646
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:38888287-38891600 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 24.42 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    157 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923896
 protein coding gene Chr2:38887488-38896180 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025707
 protein coding gene Chr2:37792773-37801447 (+)
A/J MGP_AJ_G0025684
 protein coding gene Chr2:36247520-36256209 (+)
AKR/J MGP_AKRJ_G0025654
 protein coding gene Chr2:37439316-37447995 (+)
BALB/cJ MGP_BALBcJ_G0025679
 protein coding gene Chr2:36306791-36315484 (+)
C3H/HeJ MGP_C3HHeJ_G0025440
 protein coding gene Chr2:37350775-37359455 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026125
 protein coding gene Chr2:38852676-38862216 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023530
 protein coding gene Chr2:34864192-34872693 (+)
CAST/EiJ MGP_CASTEiJ_G0024903
 protein coding gene Chr2:37308552-37317248 (+)
CBA/J MGP_CBAJ_G0025419
 protein coding gene Chr2:40296230-40304909 (+)
DBA/2J MGP_DBA2J_G0025551
 protein coding gene Chr2:35974049-35982728 (+)
FVB/NJ MGP_FVBNJ_G0025513
 protein coding gene Chr2:35838385-35847676 (+)
LP/J MGP_LPJ_G0025638
 protein coding gene Chr2:37671908-37681396 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025544
 protein coding gene Chr2:39881855-39890547 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026183
 protein coding gene Chr2:37331798-37340485 (+)
PWK/PhJ MGP_PWKPhJ_G0024645
 protein coding gene Chr2:35888890-35898029 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024450
 protein coding gene Chr2:37421560-37430285 (+)
WSB/EiJ MGP_WSBEiJ_G0024971
 protein coding gene Chr2:37497504-37508086 (+)



Homology
more
  • Human Ortholog
    WDR38, WD repeat domain 38
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    WDR38, WD repeat domain 38
  • Links
    NCBI Gene ID: 401551
    neXtProt AC: NX_Q5JTN6
    UniProt: Q5JTN6

  • Chr Location
    9q33.3; chr9:124853417-124857890 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 76646 NCBI Gene Model | MGI Sequence Detail 3314 C57BL/6J ±  kb
    transcript NM_029687 RefSeq | MGI Sequence Detail 1206 C57BL/6  
    polypeptide Q9D994 UniProt | EBI | MGI Sequence Detail 303 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 4
    References
    more
    • Summaries
      All 24
      Gene Ontology 1
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:202604 Nagamachi A, et al., Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Cancer Cell. 2013 Sep 9;24(3):305-17
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory