1700120O09Rik Gene Detail

Summary

• Symbol
  1700120O09Rik
• Name
  RIKEN cDNA 1700120O09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923906
  NCBI Gene: 76656
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:67562343-67573377 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 34.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  372 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923906	lncRNA gene	Chr14:67562343-67573377 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015273	unclassified non-coding RNA gene	Chr14:62047822-62058838 (-)
A/J	MGP_AJ_G0015247	unclassified non-coding RNA gene	Chr14:60559374-60570400 (-)
AKR/J	MGP_AKRJ_G0015210	unclassified non-coding RNA gene	Chr14:62633068-62644094 (-)
BALB/cJ	MGP_BALBcJ_G0015211	unclassified non-coding RNA gene	Chr14:60553309-60564443 (-)
C3H/HeJ	MGP_C3HHeJ_G0015035	unclassified non-coding RNA gene	Chr14:62357040-62368056 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015666	unclassified non-coding RNA gene	Chr14:64873204-64884238 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013407	unclassified non-coding RNA gene	Chr14:58467503-58478484 (-)
CAST/EiJ	MGP_CASTEiJ_G0014586	unclassified non-coding RNA gene	Chr14:58841825-58852798 (-)
CBA/J	MGP_CBAJ_G0015015	unclassified non-coding RNA gene	Chr14:66865533-66876559 (-)
DBA/2J	MGP_DBA2J_G0015108	unclassified non-coding RNA gene	Chr14:60195983-60206999 (-)
FVB/NJ	MGP_FVBNJ_G0015116	unclassified non-coding RNA gene	Chr14:59602162-59613176 (-)
LP/J	MGP_LPJ_G0015189	unclassified non-coding RNA gene	Chr14:63107066-63118080 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015143	unclassified non-coding RNA gene	Chr14:65863378-65874420 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015705	unclassified non-coding RNA gene	Chr14:61858870-61869896 (-)
PWK/PhJ	MGP_PWKPhJ_G0014378	unclassified non-coding RNA gene	Chr14:56949713-56960786 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014165	unclassified non-coding RNA gene	Chr14:57825752-57836800 (-)
WSB/EiJ	MGP_WSBEiJ_G0014693	unclassified non-coding RNA gene	Chr14:62184021-62196442 (-)

Homology

• Gene Tree
  1700120O09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700120O09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000093386 (Evidence)
• NCBI Gene
  76656

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093386	Ensembl Gene Model | MGI Sequence Detail	11035	C57BL/6J
transcript	ENSMUST00000177127	Ensembl | MGI Sequence Detail	977	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700120O09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129385	Chr14:67573609-67573647 (-)	-251 bp