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C920021L13Rik Gene Detail
Summary
  • Symbol
    C920021L13Rik
  • Name
    RIKEN cDNA C920021L13 gene
  • Synonyms
    100042889
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923991
    NCBI Gene: 100042889
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95778834-95796405 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 41.39 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    394 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923991
 lncRNA gene Chr3:95778820-95796405 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003790
 antisense lncRNA gene Chr3:96652585-96672142 (+)
A/J MGP_AJ_G0003770
 antisense lncRNA gene Chr3:93625291-93642498 (+)
AKR/J MGP_AKRJ_G0003747
 antisense lncRNA gene Chr3:95808353-95825549 (+)
BALB/cJ MGP_BALBcJ_G0003759
 antisense lncRNA gene Chr3:93405340-93423304 (+)
C3H/HeJ MGP_C3HHeJ_G0003705
 antisense lncRNA gene Chr3:96108316-96126660 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003900
 antisense lncRNA gene Chr3:100196369-100216669 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003404
 antisense lncRNA gene Chr3:89951862-89970364 (+)
CAST/EiJ MGP_CASTEiJ_G0003669
 antisense lncRNA gene Chr3:95385055-95403736 (+)
CBA/J MGP_CBAJ_G0003701
 antisense lncRNA gene Chr3:103864171-103883896 (+)
DBA/2J MGP_DBA2J_G0003711
 antisense lncRNA gene Chr3:92914333-92933905 (+)
FVB/NJ MGP_FVBNJ_G0003732
 antisense lncRNA gene Chr3:90994414-91011825 (+)
LP/J MGP_LPJ_G0003791
 antisense lncRNA gene Chr3:97964417-97984878 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003719
 antisense lncRNA gene Chr3:109994190-110012435 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003900
 antisense lncRNA gene Chr3:95455062-95474013 (+)
PWK/PhJ MGP_PWKPhJ_G0003625
 antisense lncRNA gene Chr3:92812556-92831431 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003568
 antisense lncRNA gene Chr3:93744714-93766383 (+)
WSB/EiJ MGP_WSBEiJ_G0003705
 antisense lncRNA gene Chr3:95845975-95865081 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    715
  • Tissues
    8
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042889 NCBI Gene Model | MGI Sequence Detail 17572 C57BL/6J ±  kb
transcript NR_040446 RefSeq | MGI Sequence Detail 1726 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:3782266
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory