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Ralyl Gene Detail
Summary
  • Symbol
    Ralyl
  • Name
    RALY RNA binding protein-like
  • Synonyms
    0710005M24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924147
    NCBI Gene: 76897
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:13536715-14247347 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 3.01 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    22998 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924147
 protein coding gene Chr3:13535942-14247347 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027071
 protein coding gene Chr3:11027086-11292927 (+)
A/J MGP_AJ_G0027035
 protein coding gene Chr3:10899877-11303596 (+)
AKR/J MGP_AKRJ_G0027005
 protein coding gene Chr3:10848509-11268663 (+)
BALB/cJ MGP_BALBcJ_G0027044
 protein coding gene Chr3:10601374-11025621 (+)
C3H/HeJ MGP_C3HHeJ_G0026784
 protein coding gene Chr3:11161324-11591737 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027488
 protein coding gene Chr3:11816749-12078579 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024850
 protein coding gene Chr3:9508903-9735520 (+)
CAST/EiJ MGP_CASTEiJ_G0026242
 protein coding gene Chr3:11410493-11659042 (+)
CBA/J MGP_CBAJ_G0026762
 protein coding gene Chr3:11801827-12260990 (+)
DBA/2J MGP_DBA2J_G0026898
 protein coding gene Chr3:10634927-10872209 (+)
FVB/NJ MGP_FVBNJ_G0026865
 protein coding gene Chr3:10464348-10701766 (+)
LP/J MGP_LPJ_G0027008
 protein coding gene Chr3:11609499-11849393 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026886
 protein coding gene Chr3:13654094-13970632 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027548
 protein coding gene Chr3:10866694-11110512 (+)
PWK/PhJ MGP_PWKPhJ_G0025977
 protein coding gene Chr3:10751777-11002470 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025780
 protein coding gene Chr3:10943033-11214196 (+)
WSB/EiJ MGP_WSBEiJ_G0026313
 protein coding gene Chr3:10897490-11145534 (+)



Homology
more
  • Human Ortholog
    RALYL, RALY RNA binding protein like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RALYL, RALY RNA binding protein like
  • Synonyms
    HNRPCL3
  • Links
    NCBI Gene ID: 138046
    neXtProt AC: NX_Q86SE5
    UniProt: Q86SE5

  • Chr Location
    8q21.2; chr8:84182787-84921844 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    745
  • Tissues
    4
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039717 Ensembl Gene Model | MGI Sequence Detail 710633 C57BL/6J ±  kb
transcript ENSMUST00000193117 Ensembl | MGI Sequence Detail 2933 Not Applicable  
polypeptide ENSMUSP00000148795 Ensembl | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory