1700061J23Rik Gene Detail

Summary

• Symbol
  1700061J23Rik
• Name
  RIKEN cDNA 1700061J23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924243
  NCBI Gene: 76993
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:23102140-23116375 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  519 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924243	lncRNA gene	Chr11:23102140-23116375 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005185	lincRNA gene	Chr11:20890163-20904909 (+)
A/J	MGP_AJ_G0005170	lincRNA gene	Chr11:20078580-20092874 (+)
AKR/J	MGP_AKRJ_G0005148	lincRNA gene	Chr11:20794054-20808296 (+)
BALB/cJ	MGP_BALBcJ_G0005150	lincRNA gene	Chr11:20217034-20233638 (+)
C3H/HeJ	MGP_C3HHeJ_G0005099	lincRNA gene	Chr11:20675358-20691718 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005302	lincRNA gene	Chr11:21741037-21760125 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005046	lincRNA gene	Chr11:20732276-20746301 (+)
CBA/J	MGP_CBAJ_G0005089	lincRNA gene	Chr11:22695431-22712349 (+)
DBA/2J	MGP_DBA2J_G0005106	lincRNA gene	Chr11:20010174-20024652 (+)
FVB/NJ	MGP_FVBNJ_G0005131	lincRNA gene	Chr11:19788718-19805913 (+)
LP/J	MGP_LPJ_G0005187	lincRNA gene	Chr11:20993169-21009588 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005114	lincRNA gene	Chr11:23172089-23186381 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005305	lincRNA gene	Chr11:20911809-20926001 (+)
PWK/PhJ	MGP_PWKPhJ_G0004997	lincRNA gene	Chr11:20050743-20067191 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004920	lincRNA gene	Chr11:20656212-20672240 (+)
WSB/EiJ	MGP_WSBEiJ_G0005094	lincRNA gene	Chr11:20538869-20558789 (+)

Homology

• Gene Tree
  1700061J23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700061J23Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000086366 (Evidence)
• NCBI Gene
  76993

Representative Sequences			Length	Strain/Species
genomic	76993	NCBI Gene Model | MGI Sequence Detail	14236	C57BL/6J
transcript	NR_131065	RefSeq | MGI Sequence Detail	537	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700061J23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100607	Chr11:23102083-23102086 (+)	-55 bp
Tssr100608	Chr11:23102099-23102106 (+)	-37 bp
Tssr100609	Chr11:23102115-23102124 (+)	-20 bp
Tssr100610	Chr11:23102125-23102133 (+)	-11 bp
Tssr100611	Chr11:23102135-23102145 (+)	0 bp