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A930024E05Rik Gene Detail
Summary
  • Symbol
    A930024E05Rik
  • Name
    RIKEN cDNA A930024E05 gene
  • Synonyms
    Kancr, LncKdm2b
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924414
    NCBI Gene: 109202
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:123127417-123136408 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 62.71 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    290 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924414
 lncRNA gene Chr5:123127417-123136408 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004174
 antisense lncRNA gene Chr5:126668084-126678490 (+)
A/J MGP_AJ_G0004153
 antisense lncRNA gene Chr5:121409381-121420503 (+)
AKR/J MGP_AKRJ_G0004134
 antisense lncRNA gene Chr5:125326817-125335814 (+)
BALB/cJ MGP_BALBcJ_G0004139
 antisense lncRNA gene Chr5:122757342-122766486 (+)
C3H/HeJ MGP_C3HHeJ_G0004087
 antisense lncRNA gene Chr5:125948986-125957978 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004287
 antisense lncRNA gene Chr5:131547006-131555998 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003764
 antisense lncRNA gene Chr5:116010609-116019517 (+)
CAST/EiJ MGP_CASTEiJ_G0004049
 antisense lncRNA gene Chr5:125047890-125056871 (+)
CBA/J MGP_CBAJ_G0004081
 antisense lncRNA gene Chr5:136702474-136711466 (+)
DBA/2J MGP_DBA2J_G0004097
 antisense lncRNA gene Chr5:121469021-121478005 (+)
FVB/NJ MGP_FVBNJ_G0004113
 antisense lncRNA gene Chr5:120468605-120477589 (+)
LP/J MGP_LPJ_G0004175
 antisense lncRNA gene Chr5:127204458-127213623 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004103
 antisense lncRNA gene Chr5:140382583-140391572 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004285
 antisense lncRNA gene Chr5:124926308-124935278 (+)
PWK/PhJ MGP_PWKPhJ_G0004003
 antisense lncRNA gene Chr5:120255306-120264382 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003946
 antisense lncRNA gene Chr5:122619546-122630285 (+)
WSB/EiJ MGP_WSBEiJ_G0004086
 antisense lncRNA gene Chr5:125594347-125603454 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 2 genetic backgrounds
    3 phenotypes from multigenic genotypes
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    64
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    60
  • Radiation induced
    1
  • Genomic Mutations
    2 involving A930024E05Rik
  • Find Mice (IMSR)
    85 strains or lines available
Mice homozygous for a conditional allele activated in thymocytes exhibit decreased ILC3 with increased susceptibility to C. rodentium infection.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    742
  • Tissues
    10
  • cDNA Data
    13
  • Literature Summary
    7
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 109202 NCBI Gene Model | MGI Sequence Detail 8992 C57BL/6J ±  kb
transcript NR_045820 RefSeq | MGI Sequence Detail 1907 C57BL/6  
polypeptide Q8C957 UniProt | EBI | MGI Sequence Detail 148 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 17
    cDNA 13
    Primer pair 4

    Microarray probesets 2
References
more
  • Summaries
    All 29
    Developmental Gene Expression 7
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:314103 Ulmke PA, et al., Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. Stem Cell Reports. 2021 Apr 13;16(4):968-984
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory