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A930002I21Rik Gene Detail
Summary
  • Symbol
    A930002I21Rik
  • Name
    RIKEN cDNA A930002I21 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924480
    NCBI Gene: 109226
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:106998192-107005801 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 46.61 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    288 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924480
 lncRNA gene Chr3:106998192-107005801 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006272
 lincRNA gene Chr3:108560073-108568504 (+)
A/J MGP_AJ_G0006265
 lincRNA gene Chr3:105121028-105128633 (+)
AKR/J MGP_AKRJ_G0006241
 lincRNA gene Chr3:107691529-107699020 (+)
BALB/cJ MGP_BALBcJ_G0006239
 lincRNA gene Chr3:104817732-104825621 (+)
C3H/HeJ MGP_C3HHeJ_G0006191
 lincRNA gene Chr3:108033446-108041795 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006404
 lincRNA gene Chr3:112638446-112647866 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005703
 lincRNA gene Chr3:101276389-101283868 (+)
CAST/EiJ MGP_CASTEiJ_G0006125
 lincRNA gene Chr3:107392571-107401506 (+)
CBA/J MGP_CBAJ_G0006175
 lincRNA gene Chr3:116425491-116435089 (+)
DBA/2J MGP_DBA2J_G0006196
 lincRNA gene Chr3:104324308-104331955 (+)
FVB/NJ MGP_FVBNJ_G0006217
 lincRNA gene Chr3:102204002-102211892 (+)
LP/J MGP_LPJ_G0006277
 lincRNA gene Chr3:109980329-109987818 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006208
 lincRNA gene Chr3:122560327-122568747 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006410
 lincRNA gene Chr3:107273320-107280788 (+)
PWK/PhJ MGP_PWKPhJ_G0006065
 lincRNA gene Chr3:104044571-104052212 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005976
 lincRNA gene Chr3:105415793-105423256 (+)
WSB/EiJ MGP_WSBEiJ_G0006172
 lincRNA gene Chr3:107806813-107816123 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    26
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000050179 Ensembl Gene Model | MGI Sequence Detail 7610 C57BL/6J ±  kb
transcript ENSMUST00000060946 Ensembl | MGI Sequence Detail 1600 Not Applicable  
polypeptide Q8BFY1 UniProt | EBI | MGI Sequence Detail 121 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 15
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory