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9330179D12Rik Gene Detail
Summary
  • Symbol
    9330179D12Rik
  • Name
    RIKEN cDNA 9330179D12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924808
    NCBI Gene: 77558
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:127126352-127189382 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 61.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1638 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924808
 lncRNA gene Chr6:127126348-127189382 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004363
 antisense lncRNA gene Chr6:130631023-130700033 (+)
A/J MGP_AJ_G0004340
 antisense lncRNA gene Chr6:125671712-125735869 (+)
AKR/J MGP_AKRJ_G0004322
 antisense lncRNA gene Chr6:129069494-129134279 (+)
BALB/cJ MGP_BALBcJ_G0004326
 antisense lncRNA gene Chr6:125227525-125290530 (+)
C3H/HeJ MGP_C3HHeJ_G0004275
 antisense lncRNA gene Chr6:129190045-129255710 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004476
 antisense lncRNA gene Chr6:134040661-134109685 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003937
 antisense lncRNA gene Chr6:122845110-122909068 (+)
CAST/EiJ MGP_CASTEiJ_G0004236
 antisense lncRNA gene Chr6:129392334-129459592 (+)
CBA/J MGP_CBAJ_G0004269
 antisense lncRNA gene Chr6:139196629-139264392 (+)
DBA/2J MGP_DBA2J_G0004284
 antisense lncRNA gene Chr6:124558068-124621739 (+)
FVB/NJ MGP_FVBNJ_G0004301
 antisense lncRNA gene Chr6:123484531-123548663 (+)
LP/J MGP_LPJ_G0004363
 antisense lncRNA gene Chr6:130745788-130812637 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004292
 antisense lncRNA gene Chr6:143145395-143216301 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004473
 antisense lncRNA gene Chr6:129022808-129090670 (+)
PWK/PhJ MGP_PWKPhJ_G0004189
 antisense lncRNA gene Chr6:122829504-122894891 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004131
 antisense lncRNA gene Chr6:127102160-127170457 (+)
WSB/EiJ MGP_WSBEiJ_G0004274
 antisense lncRNA gene Chr6:129386443-129453413 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 77558 NCBI Gene Model | MGI Sequence Detail 63031 C57BL/6J ±  kb
transcript NR_040273 RefSeq | MGI Sequence Detail 1319 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 11
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory