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5730596B20Rik Gene Detail
Summary
  • Symbol
    5730596B20Rik
  • Name
    RIKEN cDNA 5730596B20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924830
    NCBI Gene: 77580
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:52154135-52157831 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    123 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924830
 lncRNA gene Chr6:52154135-52157831 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030742
 protein coding gene Chr6:51414954-51418306 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0030638
 protein coding gene Chr6:50720035-50723387 (+)
BALB/cJ MGP_BALBcJ_G0030723
 protein coding gene Chr6:49372326-49375686 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0031178
 protein coding gene Chr6:52551764-52555120 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028385
 protein coding gene Chr6:46661072-46664433 (+)
CAST/EiJ MGP_CASTEiJ_G0029839
 protein coding gene Chr6:50540857-50544206 (+)
CBA/J MGP_CBAJ_G0030410
 protein coding gene Chr6:54751984-54755338 (+)
DBA/2J MGP_DBA2J_G0030560
 protein coding gene Chr6:48935869-48939221 (+)
FVB/NJ MGP_FVBNJ_G0030512
 protein coding gene Chr6:48545763-48549115 (+)
LP/J MGP_LPJ_G0030645
 protein coding gene Chr6:51397528-51400880 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030546
 protein coding gene Chr6:57382759-57386110 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031208
 protein coding gene Chr6:50646710-50650064 (+)
PWK/PhJ MGP_PWKPhJ_G0029552
 protein coding gene Chr6:48558452-48561854 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0029916
 protein coding gene Chr6:50662021-50665377 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 77580 NCBI Gene Model | MGI Sequence Detail 3697 C57BL/6J ±  kb
transcript NR_163848 RefSeq | MGI Sequence Detail 3697 C57BL/6  
polypeptide Q8BQ08 UniProt | EBI | MGI Sequence Detail 205 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory