About   Help   FAQ
Lrrc42 Gene Detail
Summary
  • Symbol
    Lrrc42
  • Name
    leucine rich repeat containing 42
  • Synonyms
    A930011F22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925059
    NCBI Gene: 77809
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:107090711-107110729 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    442 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925059
 protein coding gene Chr4:107090711-107110730 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028535
 protein coding gene Chr4:107913790-107933790 (-)
A/J MGP_AJ_G0028498
 protein coding gene Chr4:104043170-104063318 (-)
AKR/J MGP_AKRJ_G0028445
 protein coding gene Chr4:106588729-106609762 (-)
BALB/cJ MGP_BALBcJ_G0028517
 protein coding gene Chr4:104236957-104257344 (-)
C3H/HeJ MGP_C3HHeJ_G0028231
 protein coding gene Chr4:107340883-107360907 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028957
 protein coding gene Chr4:111788775-111811969 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026248
 protein coding gene Chr4:99321843-99345098 (-)
CAST/EiJ MGP_CASTEiJ_G0027667
 protein coding gene Chr4:105152516-105175908 (-)
CBA/J MGP_CBAJ_G0028200
 protein coding gene Chr4:115413927-115437763 (-)
DBA/2J MGP_DBA2J_G0028348
 protein coding gene Chr4:103667846-103687847 (-)
FVB/NJ MGP_FVBNJ_G0028316
 protein coding gene Chr4:102534706-102555253 (-)
LP/J MGP_LPJ_G0028449
 protein coding gene Chr4:108106853-108126851 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028342
 protein coding gene Chr4:120702806-120726240 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028993
 protein coding gene Chr4:106832052-106852362 (-)
PWK/PhJ MGP_PWKPhJ_G0027393
 protein coding gene Chr4:101904077-101927747 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027217
 protein coding gene Chr4:104224295-104247013 (-)
WSB/EiJ MGP_WSBEiJ_G0027748
 protein coding gene Chr4:107010716-107032068 (-)



Homology
more
  • Human Ortholog
    LRRC42, leucine rich repeat containing 42
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRRC42, leucine rich repeat containing 42
  • Synonyms
    dJ167A19.4
  • Links
    NCBI Gene ID: 115353
    neXtProt AC: NX_Q9Y546
    UniProt: Q9Y546

  • Chr Location
    1p32.3; chr1:53946077-53968168 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    749
  • Tissues
    6
  • cDNA Data
    61
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028617 Ensembl Gene Model | MGI Sequence Detail 20019 C57BL/6J ±  kb
transcript ENSMUST00000030360 Ensembl | MGI Sequence Detail 1755 Not Applicable  
polypeptide ENSMUSP00000030360 Ensembl | MGI Sequence Detail 421 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140162
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory