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Six3os1 Gene Detail
Summary
  • Symbol
    Six3os1
  • Name
    SIX homeobox 3, opposite strand 1
  • Synonyms
    D17Mgi26, E130112H22Rik, Rncr1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925118
    NCBI Gene: 100043902
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:85909360-85925824 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 55.42 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    321 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925118
 lncRNA gene Chr17:85908079-85926066 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015356
 unclassified non-coding RNA gene Chr17:88850997-88871704 (-)
A/J MGP_AJ_G0015330
 unclassified non-coding RNA gene Chr17:86009018-86026616 (-)
AKR/J MGP_AKRJ_G0015294
 unclassified non-coding RNA gene Chr17:87410869-87428358 (-)
BALB/cJ MGP_BALBcJ_G0015294
 unclassified non-coding RNA gene Chr17:85852333-85869964 (-)
C3H/HeJ MGP_C3HHeJ_G0015118
 unclassified non-coding RNA gene Chr17:88288987-88306630 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015748
 unclassified non-coding RNA gene Chr17:91976760-91996831 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013489
 unclassified non-coding RNA gene Chr17:81202457-81220469 (-)
CAST/EiJ MGP_CASTEiJ_G0014669
 unclassified non-coding RNA gene Chr17:89094590-89113637 (-)
CBA/J MGP_CBAJ_G0015097
 unclassified non-coding RNA gene Chr17:95784641-95802868 (-)
DBA/2J MGP_DBA2J_G0015192
 unclassified non-coding RNA gene Chr17:84472700-84490333 (-)
FVB/NJ MGP_FVBNJ_G0015199
 unclassified non-coding RNA gene Chr17:83966137-83984088 (-)
LP/J MGP_LPJ_G0015272
 unclassified non-coding RNA gene Chr17:89611009-89632800 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015225
 unclassified non-coding RNA gene Chr17:95795164-95813680 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015787
 unclassified non-coding RNA gene Chr17:87922496-87940306 (-)
PWK/PhJ MGP_PWKPhJ_G0014459
 unclassified non-coding RNA gene Chr17:84069572-84088204 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014246
 unclassified non-coding RNA gene Chr17:84724529-84742278 (-)
WSB/EiJ MGP_WSBEiJ_G0014776
 unclassified non-coding RNA gene Chr17:88779561-88798184 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    853
  • Tissues
    68
  • cDNA Data
    34
  • Literature Summary
    8
Sequences &
Gene Models
less
  • All Sequences
    65
  • RefSeq
    8
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043902 NCBI Gene Model | MGI Sequence Detail 16465 C57BL/6J ±  kb
transcript NR_038082 RefSeq | MGI Sequence Detail 5352 C57BL/6  
polypeptide Q8C8W6 UniProt | EBI | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 41
    cDNA 36
    Primer pair 5

    Microarray probesets 1
Other
Accession IDs
less
MGI:3035635
References
more
  • Summaries
    All 21
    Developmental Gene Expression 8
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:350099 Song X, et al., Homeobox Gene Six3 is Required for the Differentiation of D2-Type Medium Spiny Neurons. Neurosci Bull. 2021 Jul;37(7):985-998
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory