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Pate13 Gene Detail
Summary
  • Symbol
    Pate13
  • Name
    prostate and testis expressed 13
  • Synonyms
    9230113P08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925158
    NCBI Gene: 77908
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:35819719-35822092 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.52 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    174 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925158
 protein coding gene Chr9:35819719-35822092 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034547
 protein coding gene Chr9:33725926-33730588 (+)
A/J MGP_AJ_G0034526
 protein coding gene Chr9:32867209-33029454 (+)
AKR/J MGP_AKRJ_G0034453
 protein coding gene Chr9:34007967-34009057 (-)
BALB/cJ MGP_BALBcJ_G0034516
 protein coding gene Chr9:32784256-32786970 (+)
C3H/HeJ MGP_C3HHeJ_G0034230
 protein coding gene Chr9:34032902-34145404 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035039
 protein coding gene Chr9:35262079-35269942 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0033551
 protein coding gene Chr9:33874404-33875646 (+)
CBA/J MGP_CBAJ_G0034203
 protein coding gene Chr9:36448569-36474040 (-)
DBA/2J MGP_DBA2J_G0034361
 protein coding gene Chr9:33317979-33324125 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0034445
 protein coding gene Chr9:33988917-33991847 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0035057
 protein coding gene Chr9:33572354-33573553 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 77908 NCBI Gene Model | MGI Sequence Detail 2374 C57BL/6J ±  kb
transcript NM_001378222 RefSeq | MGI Sequence Detail 1694 C57BL/6  
polypeptide D3YWX3 UniProt | EBI | MGI Sequence Detail 137 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • GlyGen
    D3YWX3 1 site
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
Other
Accession IDs
less
MGI:6278533
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory