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5430434F05Rik Gene Detail
Summary
  • Symbol
    5430434F05Rik
  • Name
    RIKEN cDNA 5430434F05 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925345
    NCBI Gene: 78095
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:83394422-83397974 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, cytoband D1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    168 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925345
 lncRNA gene Chr6:83394422-83397974 (-)
129S1/SvImJ MGP_129S1SvImJ_G0001977
 unclassified gene Chr6:84423118-84426664 (-)
A/J MGP_AJ_G0001954
 unclassified gene Chr6:81212147-81215695 (-)
AKR/J MGP_AKRJ_G0001941
 unclassified gene Chr6:83566233-83569755 (-)
BALB/cJ MGP_BALBcJ_G0001951
 unclassified gene Chr6:81236788-81240336 (-)
C3H/HeJ MGP_C3HHeJ_G0001974
 unclassified gene Chr6:100821381-100825044 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002072
 unclassified gene Chr6:86746262-86750784 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0001727
 unclassified gene Chr6:79563415-79567079 (-)
CAST/EiJ MGP_CASTEiJ_G0001895
 unclassified gene Chr6:83581624-83585210 (-)
CBA/J MGP_CBAJ_G0001921
 unclassified gene Chr6:90149863-90153337 (-)
DBA/2J MGP_DBA2J_G0001925
 unclassified gene Chr6:80528574-80533955 (-)
FVB/NJ MGP_FVBNJ_G0001933
 unclassified gene Chr6:79737645-79741423 (-)
LP/J MGP_LPJ_G0001979
 unclassified gene Chr6:84431955-84435501 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0001911
 unclassified gene Chr6:94459903-94464561 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0002062
 unclassified gene Chr6:83371254-83375889 (-)
PWK/PhJ MGP_PWKPhJ_G0001858
 unclassified gene Chr6:79432926-79436530 (-)
SPRET/EiJ MGP_SPRETEiJ_G0001820
 unclassified gene Chr6:82224508-82228110 (-)
WSB/EiJ MGP_WSBEiJ_G0001921
 unclassified gene Chr6:83808348-83813580 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000108780 Ensembl Gene Model | MGI Sequence Detail 3553 C57BL/6J ±  kb
transcript AK162538 GenBank | ENA | DDBJ | MGI Sequence Detail 3548 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory