4930439D14Rik Gene Detail

Summary

• Symbol
  4930439D14Rik
• Name
  RIKEN cDNA 4930439D14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925417
  NCBI Gene: 78167
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:156767408-156767766 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925417	lncRNA gene	Chr1:156766364-156767766 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002768	antisense lncRNA gene	Chr1:161925188-161925546 (+)
A/J	MGP_AJ_G0002744	antisense lncRNA gene	Chr1:155413096-155413454 (+)
AKR/J	MGP_AKRJ_G0002725	antisense lncRNA gene	Chr1:160155565-160155923 (+)
BALB/cJ	MGP_BALBcJ_G0002731	antisense lncRNA gene	Chr1:155911840-155912198 (+)
C3H/HeJ	MGP_C3HHeJ_G0002689	antisense lncRNA gene	Chr1:160283931-160284289 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002874	antisense lncRNA gene	Chr1:167482009-167482367 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002421	antisense lncRNA gene	Chr1:147607815-147608175 (+)
CAST/EiJ	MGP_CASTEiJ_G0002662	antisense lncRNA gene	Chr1:159840429-159840787 (+)
CBA/J	MGP_CBAJ_G0002685	antisense lncRNA gene	Chr1:173403613-173403971 (+)
DBA/2J	MGP_DBA2J_G0002691	antisense lncRNA gene	Chr1:154357464-154357822 (+)
FVB/NJ	MGP_FVBNJ_G0002711	antisense lncRNA gene	Chr1:152815976-152816334 (+)
LP/J	MGP_LPJ_G0002769	antisense lncRNA gene	Chr1:163046812-163047170 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002701	antisense lncRNA gene	Chr1:180906407-180906765 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002878	antisense lncRNA gene	Chr1:159981444-159981802 (+)
PWK/PhJ	MGP_PWKPhJ_G0002619	antisense lncRNA gene	Chr1:153455765-153456123 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002570	antisense lncRNA gene	Chr1:158715292-158715650 (+)
WSB/EiJ	MGP_WSBEiJ_G0002691	antisense lncRNA gene	Chr1:160077590-160077948 (+)

Homology

• Gene Tree
  4930439D14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 4930439D14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101905 (Evidence)
• NCBI Gene
  78167

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101905	Ensembl Gene Model | MGI Sequence Detail	359	C57BL/6J
transcript	ENSMUST00000186765	Ensembl | MGI Sequence Detail	359	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930439D14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9581	Chr1:156767227-156767259 (+)	-165 bp