Rbm46os Gene Detail

Summary

• Symbol
  Rbm46os
• Name
  RNA binding motif protein 46, opposite strand
• Synonyms
  4930444E23Rik, 4930564K09Rik, Lratos

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925462
  NCBI Gene: 78212
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:82784012-82850945 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 36.79 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1931 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925462	antisense lncRNA gene	Chr3:82784012-82850945 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003767	antisense lncRNA gene	Chr3:82696309-82768046 (+)
A/J	MGP_AJ_G0003747	antisense lncRNA gene	Chr3:79969532-80037096 (+)
AKR/J	MGP_AKRJ_G0003724	antisense lncRNA gene	Chr3:81877924-81947607 (+)
BALB/cJ	MGP_BALBcJ_G0003736	antisense lncRNA gene	Chr3:80062037-80128699 (+)
C3H/HeJ	MGP_C3HHeJ_G0003683	antisense lncRNA gene	Chr3:82150695-82221540 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003877	antisense lncRNA gene	Chr3:85815670-85889331 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003381	antisense lncRNA gene	Chr3:75701106-75766149 (+)
CAST/EiJ	MGP_CASTEiJ_G0003646	antisense lncRNA gene	Chr3:82348116-82416033 (+)
CBA/J	MGP_CBAJ_G0003679	antisense lncRNA gene	Chr3:88722917-88794209 (+)
DBA/2J	MGP_DBA2J_G0003688	antisense lncRNA gene	Chr3:79519567-79582582 (+)
FVB/NJ	MGP_FVBNJ_G0003709	antisense lncRNA gene	Chr3:77801946-77865138 (+)
LP/J	MGP_LPJ_G0003768	antisense lncRNA gene	Chr3:83687039-83753516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003697	antisense lncRNA gene	Chr3:95105975-95177830 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003878	antisense lncRNA gene	Chr3:81664467-81736503 (+)
PWK/PhJ	MGP_PWKPhJ_G0003603	antisense lncRNA gene	Chr3:79272555-79342209 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003545	antisense lncRNA gene	Chr3:80863628-80930904 (+)
WSB/EiJ	MGP_WSBEiJ_G0003682	antisense lncRNA gene	Chr3:82005803-82073935 (+)

Homology

• Gene Tree
  Rbm46os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rbm46os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000086273 (Evidence)
• NCBI Gene
  78212

Representative Sequences			Length	Strain/Species
genomic	78212	NCBI Gene Model | MGI Sequence Detail	66934	C57BL/6J
transcript	NR_040381	RefSeq | MGI Sequence Detail	3261	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1921208

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rbm46os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29638	Chr3:82784003-82784014 (+)	-3 bp