4930589O11Rik Gene Detail

Summary

• Symbol
  4930589O11Rik
• Name
  RIKEN cDNA 4930589O11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925464
  NCBI Gene: 78214
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:65650439-65651358 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925464	lncRNA gene	Chr5:65650439-65651358 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001570	unclassified gene	Chr5:65135928-65136847 (+)
A/J	MGP_AJ_G0001551	unclassified gene	Chr5:62717670-62718589 (+)
AKR/J	MGP_AKRJ_G0001536	unclassified gene	Chr5:64713247-64714166 (+)
BALB/cJ	MGP_BALBcJ_G0001547	unclassified gene	Chr5:63405508-63406427 (+)
C3H/HeJ	MGP_C3HHeJ_G0001524	unclassified gene	Chr5:65048395-65049314 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001665	unclassified gene	Chr5:67816383-67817302 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001351	unclassified gene	Chr5:58790928-58791850 (+)
CAST/EiJ	MGP_CASTEiJ_G0001498	unclassified gene	Chr5:64150517-64151438 (+)
CBA/J	MGP_CBAJ_G0001515	unclassified gene	Chr5:70015928-70016847 (+)
DBA/2J	MGP_DBA2J_G0001520	unclassified gene	Chr5:62751436-62752355 (+)
FVB/NJ	MGP_FVBNJ_G0001527	unclassified gene	Chr5:61923690-61924609 (+)
LP/J	MGP_LPJ_G0001574	unclassified gene	Chr5:65644739-65645658 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001510	unclassified gene	Chr5:72897080-72897999 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001653	unclassified gene	Chr5:64377264-64378183 (+)
PWK/PhJ	MGP_PWKPhJ_G0001455	unclassified gene	Chr5:61717922-61718846 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001424	unclassified gene	Chr5:63695502-63696425 (+)
WSB/EiJ	MGP_WSBEiJ_G0001515	unclassified gene	Chr5:64580298-64581217 (+)

Homology

• Gene Tree
  4930589O11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 4930589O11Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107195 (Evidence)
• NCBI Gene
  78214

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107195	Ensembl Gene Model | MGI Sequence Detail	920	C57BL/6J
transcript	AK019834	GenBank | ENA | DDBJ | MGI Sequence Detail	920	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 19

  Phenotypes 13
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 4930589O11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46465	Chr5:65650779-65650811 (+)	356 bp