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Phf23 Gene Detail
Summary
  • Symbol
    Phf23
  • Name
    PHD finger protein 23
  • Synonyms
    2410141M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925496
    NCBI Gene: 78246
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:69886603-69890835 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 42.95 cM, cytoband B4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925496
 protein coding gene Chr11:69886592-69890837 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018576
 protein coding gene Chr11:70492758-70499592 (+)
A/J MGP_AJ_G0018544
 protein coding gene Chr11:67820761-67824946 (+)
AKR/J MGP_AKRJ_G0018513
 protein coding gene Chr11:69841999-69846132 (+)
BALB/cJ MGP_BALBcJ_G0018516
 protein coding gene Chr11:68149378-68153701 (+)
C3H/HeJ MGP_C3HHeJ_G0018329
 protein coding gene Chr11:69880885-69885018 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018967
 protein coding gene Chr11:72612638-72616679 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016612
 protein coding gene Chr11:64744810-64749050 (+)
CAST/EiJ MGP_CASTEiJ_G0017884
 protein coding gene Chr11:70123652-70128890 (+)
CBA/J MGP_CBAJ_G0018301
 protein coding gene Chr11:75871828-75875982 (+)
DBA/2J MGP_DBA2J_G0018411
 protein coding gene Chr11:67405126-67409283 (+)
FVB/NJ MGP_FVBNJ_G0018401
 protein coding gene Chr11:67052425-67056553 (+)
LP/J MGP_LPJ_G0018481
 protein coding gene Chr11:71071353-71075486 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018424
 protein coding gene Chr11:76461647-76469191 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019009
 protein coding gene Chr11:70115900-70121249 (+)
PWK/PhJ MGP_PWKPhJ_G0017658
 protein coding gene Chr11:68057985-68062205 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017448
 protein coding gene Chr11:69932480-69936697 (+)
WSB/EiJ MGP_WSBEiJ_G0017938
 protein coding gene Chr11:69781369-69785409 (+)



Homology
more
  • Human Ortholog
    PHF23, PHD finger protein 23
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHF23, PHD finger protein 23
  • Synonyms
    hJUNE-1b
  • Links
    NCBI Gene ID: 79142
    neXtProt AC: NX_Q9BUL5
    UniProt: Q9BUL5

  • Chr Location
    17p13.1; chr17:7235029-7240828 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    748
  • Tissues
    42
  • cDNA Data
    97
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000018572 Ensembl Gene Model | MGI Sequence Detail 4233 C57BL/6J ±  kb
transcript ENSMUST00000018716 Ensembl | MGI Sequence Detail 2006 Not Applicable  
polypeptide ENSMUSP00000018716 Ensembl | MGI Sequence Detail 401 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 98
    cDNA 97
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 47
    Developmental Gene Expression 4
    Gene Ontology 6
    Phenotypes 15
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:301335 Chen M, et al., An Epigenetic Mechanism Underlying Chromosome 17p Deletion-Driven Tumorigenesis. Cancer Discov. 2020 Sep 25;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory