4921539H07Rik Gene Detail

Summary

• Symbol
  4921539H07Rik
• Name
  RIKEN cDNA 4921539H07 gene
• Synonyms
  Gm2668

• Feature Type
  lncRNA gene
• IDs
  MGI:1925506
  NCBI Gene: 78256
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:58024474-58075037 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1561 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925506	lncRNA gene	Chr3:58024474-58075037 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006195	lincRNA gene	Chr3:56932848-56983399 (+)
A/J	MGP_AJ_G0006187	lincRNA gene	Chr3:55173174-55224439 (+)
AKR/J	MGP_AKRJ_G0006163	lincRNA gene	Chr3:56310499-56361006 (+)
BALB/cJ	MGP_BALBcJ_G0006163	lincRNA gene	Chr3:54986634-55037682 (+)
C3H/HeJ	MGP_C3HHeJ_G0006113	lincRNA gene	Chr3:56520137-56570429 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006326	lincRNA gene	Chr3:59039207-59090068 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005634	lincRNA gene	Chr3:51528188-51579980 (+)
CAST/EiJ	MGP_CASTEiJ_G0006047	lincRNA gene	Chr3:56681424-56737773 (+)
CBA/J	MGP_CBAJ_G0006098	lincRNA gene	Chr3:61000050-61052812 (+)
DBA/2J	MGP_DBA2J_G0006117	lincRNA gene	Chr3:54672019-54725700 (+)
FVB/NJ	MGP_FVBNJ_G0006141	lincRNA gene	Chr3:53642386-53695344 (+)
LP/J	MGP_LPJ_G0006200	lincRNA gene	Chr3:57684985-57737188 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006131	lincRNA gene	Chr3:65120348-65174598 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006330	lincRNA gene	Chr3:56264815-56315504 (+)
PWK/PhJ	MGP_PWKPhJ_G0005992	lincRNA gene	Chr3:54314984-54371258 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005901	lincRNA gene	Chr3:55933590-55991965 (+)
WSB/EiJ	MGP_WSBEiJ_G0006094	lincRNA gene	Chr3:56341548-56392523 (+)

Homology

• Gene Tree
  4921539H07Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 4921539H07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000104586 (Evidence)
• NCBI Gene
  78256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104586	Ensembl Gene Model | MGI Sequence Detail	50564	C57BL/6J
transcript	ENSMUST00000197200	Ensembl | MGI Sequence Detail	3118	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3780837

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4921539H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29197	Chr3:58024536-58024550 (+)	69 bp