1700119I11Rik Gene Detail

Summary

• Symbol
  1700119I11Rik
• Name
  RIKEN cDNA 1700119I11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925729
  NCBI Gene: 78479
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:92009551-92010163 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 47.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925729	lncRNA gene	Chr13:92009551-92010163 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003204	antisense lncRNA gene	Chr13:93151970-93152582 (+)
A/J	MGP_AJ_G0003180	antisense lncRNA gene	Chr13:89709151-89709763 (+)
AKR/J	MGP_AKRJ_G0003162	antisense lncRNA gene	Chr13:92429624-92430236 (+)
BALB/cJ	MGP_BALBcJ_G0003167	antisense lncRNA gene	Chr13:90349358-90349970 (+)
C3H/HeJ	MGP_C3HHeJ_G0003123	antisense lncRNA gene	Chr13:92128990-92129602 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003310	antisense lncRNA gene	Chr13:96007196-96007808 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002837	antisense lncRNA gene	Chr13:85655952-85656549 (+)
CAST/EiJ	MGP_CASTEiJ_G0003090	antisense lncRNA gene	Chr13:91398734-91399346 (+)
CBA/J	MGP_CBAJ_G0003120	antisense lncRNA gene	Chr13:99813059-99813671 (+)
DBA/2J	MGP_DBA2J_G0003125	antisense lncRNA gene	Chr13:89465057-89465669 (+)
FVB/NJ	MGP_FVBNJ_G0003143	antisense lncRNA gene	Chr13:88286663-88287275 (+)
LP/J	MGP_LPJ_G0003201	antisense lncRNA gene	Chr13:93272673-93273285 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003134	antisense lncRNA gene	Chr13:100321201-100321813 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003311	antisense lncRNA gene	Chr13:91829508-91830120 (+)
PWK/PhJ	MGP_PWKPhJ_G0003047	antisense lncRNA gene	Chr13:88212673-88213285 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002994	antisense lncRNA gene	Chr13:88094282-88094894 (+)
WSB/EiJ	MGP_WSBEiJ_G0003123	antisense lncRNA gene	Chr13:92311390-92312002 (+)

Homology

• Gene Tree
  1700119I11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700119I11Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000082488 (Evidence)
• NCBI Gene
  78479

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082488	Ensembl Gene Model | MGI Sequence Detail	613	C57BL/6J
transcript	ENSMUST00000122270	Ensembl | MGI Sequence Detail	336	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700119I11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120619	Chr13:92009549-92009562 (+)	5 bp