D530037P16Rik Gene Detail

Summary

• Symbol
  D530037P16Rik
• Name
  RIKEN cDNA D530037P16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925823
  NCBI Gene: 78573
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:145125081-145126107 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925823	lncRNA gene	Chr3:145125081-145126107 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037113	sense overlapping lncRNA gene	Chr3:148839479-148840513 (+)
A/J	MGP_AJ_G0037100	sense overlapping lncRNA gene	Chr3:143534451-143535485 (+)
AKR/J	MGP_AKRJ_G0037048	sense overlapping lncRNA gene	Chr3:147339925-147340958 (+)
BALB/cJ	MGP_BALBcJ_G0037091	sense overlapping lncRNA gene	Chr3:143349619-143350653 (+)
C3H/HeJ	MGP_C3HHeJ_G0036778	sense overlapping lncRNA gene	Chr3:147712445-147713479 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037605	sense overlapping lncRNA gene	Chr3:153932306-153933332 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034648	sense overlapping lncRNA gene	Chr3:138613525-138614548 (+)
CAST/EiJ	MGP_CASTEiJ_G0035965	sense overlapping lncRNA gene	Chr3:147664703-147665742 (+)
CBA/J	MGP_CBAJ_G0036753	sense overlapping lncRNA gene	Chr3:159289811-159290845 (+)
DBA/2J	MGP_DBA2J_G0036928	sense overlapping lncRNA gene	Chr3:142682405-142683431 (+)
FVB/NJ	MGP_FVBNJ_G0036878	sense overlapping lncRNA gene	Chr3:140091546-140092563 (+)
LP/J	MGP_LPJ_G0036975	sense overlapping lncRNA gene	Chr3:150230247-150231281 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036886	sense overlapping lncRNA gene	Chr3:167615162-167616196 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037722	sense overlapping lncRNA gene	Chr3:146941919-146942953 (+)
PWK/PhJ	MGP_PWKPhJ_G0035659	sense overlapping lncRNA gene	Chr3:142524189-142525208 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035466	sense overlapping lncRNA gene	Chr3:145112564-145113615 (+)
WSB/EiJ	MGP_WSBEiJ_G0036167	sense overlapping lncRNA gene	Chr3:147900893-147901927 (+)

Homology

• Gene Tree
  D530037P16Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105959 (Evidence)
• NCBI Gene
  78573

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105959	Ensembl Gene Model | MGI Sequence Detail	1027	C57BL/6J
transcript	ENSMUST00000199255	Ensembl | MGI Sequence Detail	1027	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573