Mir142hg MGI Mouse Gene Detail - MGI:1925841 - Mir142 host gene (non-protein coding)

Symbol

Mir142hg
Name

Mir142 host gene (non-protein coding)
Synonyms

A430104N18Rik

Feature Type

lncRNA gene
IDs

MGI:1925841
NCBI Gene: 78591
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr11:87646399-87648102 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 52.21 cM
Mapping Data

2 experiments

SNPs within 2kb

44 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925841	lncRNA gene	Chr11:87646399-87648102 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005275	lincRNA gene	Chr11:89387584-89389285 (+)
A/J	MGP_AJ_G0005260	lincRNA gene	Chr11:85941116-85942806 (+)
AKR/J	MGP_AKRJ_G0005237	lincRNA gene	Chr11:88515835-88517505 (+)
BALB/cJ	MGP_BALBcJ_G0005240	lincRNA gene	Chr11:86342268-86343966 (+)
C3H/HeJ	MGP_C3HHeJ_G0005189	lincRNA gene	Chr11:88554401-88556100 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005392	lincRNA gene	Chr11:92103513-92105197 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004785	lincRNA gene	Chr11:82969106-82970765 (+)
CAST/EiJ	MGP_CASTEiJ_G0005136	lincRNA gene	Chr11:89247588-89249274 (+)
CBA/J	MGP_CBAJ_G0005179	lincRNA gene	Chr11:95962445-95970508 (+)
DBA/2J	MGP_DBA2J_G0005196	lincRNA gene	Chr11:85494576-85496988 (+)
FVB/NJ	MGP_FVBNJ_G0005221	lincRNA gene	Chr11:85001342-85003032 (+)
LP/J	MGP_LPJ_G0005277	lincRNA gene	Chr11:89879259-89880962 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005204	lincRNA gene	Chr11:96012495-96014187 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005396	lincRNA gene	Chr11:88753189-88754890 (+)
PWK/PhJ	MGP_PWKPhJ_G0005085	lincRNA gene	Chr11:86344490-86346172 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005007	lincRNA gene	Chr11:88310596-88313320 (+)
WSB/EiJ	MGP_WSBEiJ_G0005184	lincRNA gene	Chr11:88644180-88645868 (+)

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Gene Tree

Mir142hg

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Phenotype Summary

10 phenotypes from 1 allele in 1 genetic background
18 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

5
Chemically induced (other)

1
Gene trapped

3
Targeted

1
Genomic Mutations

2 involving Mir142hg
Find Mice (IMSR)

3 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for an allele that abolishes expression of Mir142 disrupts dendritic cell homeostasis.

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All GO Annotations

1
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

709
Tissues

1
cDNA Data

5
Literature Summary

1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

GEO

Expression Atlas

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All Sequences

27

Ensembl

ENSMUSG00000084796 (Evidence)
NCBI Gene

78591

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000084796	Ensembl Gene Model \| MGI Sequence Detail	1704	C57BL/6J	± kb
	transcript	ENSMUST00000241886	Ensembl \| MGI Sequence Detail	1698	Not Applicable

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All nucleic 6

cDNA 5

Primer pair 1

Microarray probesets 2

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MGI:2144590

Summaries

All 31

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 18
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:333853 De Vito F, et al., MiR-142-3p regulates synaptopathy-driven disease progression in multiple sclerosis. Neuropathol Appl Neurobiol. 2022 Feb;48(2):e12765

TSS for Mir142hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103966	Chr11:87645686-87645697 (+)	-707 bp
Tssr103967	Chr11:87646393-87646414 (+)	5 bp
Tssr103968	Chr11:87646715-87646727 (+)	322 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24