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1700116B05Rik Gene Detail
Summary
  • Symbol
    1700116B05Rik
  • Name
    RIKEN cDNA 1700116B05 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925889
    NCBI Gene: 78639
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:50603772-50604454 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 31.50 cM, cytoband B5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    151 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925889
 lncRNA gene Chr16:50603772-50604454 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005668
 lincRNA gene Chr16:49717811-49718493 (+)
A/J MGP_AJ_G0005655
 lincRNA gene Chr16:47552745-47553427 (+)
AKR/J MGP_AKRJ_G0005634
 lincRNA gene Chr16:49132040-49132722 (+)
BALB/cJ MGP_BALBcJ_G0005635
 lincRNA gene Chr16:47618442-47619124 (+)
C3H/HeJ MGP_C3HHeJ_G0005582
 lincRNA gene Chr16:49198750-49199433 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005793
 lincRNA gene Chr16:50990748-50998449 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005151
 lincRNA gene Chr16:47586229-47586899 (+)
CAST/EiJ MGP_CASTEiJ_G0005526
 lincRNA gene Chr16:49550027-49550700 (+)
CBA/J MGP_CBAJ_G0005572
 lincRNA gene Chr16:53030573-53032376 (+)
DBA/2J MGP_DBA2J_G0005587
 lincRNA gene Chr16:47271957-47272772 (+)
FVB/NJ MGP_FVBNJ_G0005614
 lincRNA gene Chr16:47139840-47140522 (+)
LP/J MGP_LPJ_G0005671
 lincRNA gene Chr16:49506557-49508925 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005599
 lincRNA gene Chr16:52739254-52740687 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005793
 lincRNA gene Chr16:49184958-49187560 (+)
PWK/PhJ MGP_PWKPhJ_G0005473
 lincRNA gene Chr16:47625038-47625722 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005392
 lincRNA gene Chr16:49006759-49007426 (+)
WSB/EiJ MGP_WSBEiJ_G0005576
 lincRNA gene Chr16:49178887-49180625 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    3
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 78639 NCBI Gene Model | MGI Sequence Detail 683 C57BL/6J ±  kb
transcript NR_131005 RefSeq | MGI Sequence Detail 428 C57BL/6  
polypeptide Q9CU03 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory