C030006K11Rik MGI Mouse Gene Detail - MGI:1925941

C030006K11Rik Gene Detail

Symbol

C030006K11Rik
Name

RIKEN cDNA C030006K11 gene
Synonyms

1110033I13Rik

Feature Type

protein coding gene
IDs

MGI:1925941
NCBI Gene: 223665
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr15:76605665-76608045 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 15, 36.28 cM
Mapping Data

1 experiment

SNPs within 2kb

81 from dbSNP Build 142
Strain Annotations

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925941	protein coding gene	Chr15:76605665-76608045 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

C8orf82, chromosome 8 open reading frame 82

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C8orf82, chromosome 8 open reading frame 82
Links

HGNC:33826

NCBI Gene ID: 414919

neXtProt AC: NX_Q6P1X6

UniProt: Q6P1X6
Chr Location

8q24.3; chr8:144525733-144529132 (-) GRCh38

MGI Vertebrate Homology

C030006K11Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C8orf82
Gene Tree

C030006K11Rik

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References

1 with disease annotations

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Phenotype Summary

24 phenotype references

All Mutations and Alleles

6
Chemically induced (other)

3
Radiation induced

2
Targeted

1
Genomic Mutations

5 involving C030006K11Rik
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

9 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

45

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

29
RefSeq

4
UniProt

2
CCDS

CCDS27591.1

Ensembl

ENSMUSG00000116138 (Evidence)
NCBI Gene

223665

			Length	Strain/Species	Flank
genomic	223665	NCBI Gene Model \| MGI Sequence Detail	2381	C57BL/6J	± kb
transcript	NM_176828	RefSeq \| MGI Sequence Detail	1836	C57BL/6
polypeptide	Q8VE95	UniProt \| EBI \| MGI Sequence Detail	218	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000059860 UPF0598 protein C8orf82

(term hierarchy)
InterPro Domains

IPR028108 Protein of unknown function DUF4505

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All nucleic 47

cDNA 47

Microarray probesets 2

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MGI:1923568

Summaries

All 43

Diseases 1

Gene Ontology 1

Phenotypes 24
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for C030006K11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135054	Chr15:76608014-76608053 (-)	11 bp
Tssr135053	Chr15:76607972-76608001 (-)	58 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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