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Pabir2 Gene Detail
Summary
  • Symbol
    Pabir2
  • Name
    PABIR family member 2
  • Synonyms
    4632404H22Rik, Fam122b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926005
    NCBI Gene: 78755
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:52332292-52358682 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.43 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    440 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926005
 protein coding gene ChrX:52332292-52358728 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035721
 protein coding gene ChrX:48492432-48521131 (-)
A/J MGP_AJ_G0035704
 protein coding gene ChrX:48338591-48364962 (-)
AKR/J MGP_AKRJ_G0035624
 protein coding gene ChrX:49692755-49720219 (-)
BALB/cJ MGP_BALBcJ_G0035690
 protein coding gene ChrX:47871753-47898094 (-)
C3H/HeJ MGP_C3HHeJ_G0035394
 protein coding gene ChrX:48743626-48769967 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036220
 protein coding gene ChrX:49643437-49671799 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033072
 protein coding gene ChrX:45798851-45825369 (-)
CAST/EiJ MGP_CASTEiJ_G0034685
 protein coding gene ChrX:36187379-36213744 (-)
CBA/J MGP_CBAJ_G0035368
 protein coding gene ChrX:51023678-51050019 (-)
DBA/2J MGP_DBA2J_G0035523
 protein coding gene ChrX:48115936-48142277 (-)
FVB/NJ MGP_FVBNJ_G0035471
 protein coding gene ChrX:47838341-47864661 (-)
LP/J MGP_LPJ_G0035610
 protein coding gene ChrX:48817819-48844580 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035510
 protein coding gene ChrX:52570556-52599310 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036237
 protein coding gene ChrX:48373075-48399416 (-)
PWK/PhJ MGP_PWKPhJ_G0034384
 protein coding gene ChrX:35677225-35703840 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034229
 protein coding gene ChrX:37023468-37049729 (-)
WSB/EiJ MGP_WSBEiJ_G0034829
 protein coding gene ChrX:47932423-47958758 (-)



Homology
more
  • Human Ortholog
    PABIR2, PABIR family member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PABIR2, PABIR family member 2
  • Synonyms
    FAM122B, SPACIA2
  • Links
    NCBI Gene ID: 159090
    neXtProt AC: NX_Q7Z309
    UniProt: Q7Z309

  • Chr Location
    Xq26.3; chrX:134769566-134797232 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotypes from 2 alleles in 2 genetic backgrounds
    3 images
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male chimeras hemizygous for a gene trapped allele appear phenotypically normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    816
  • Tissues
    41
  • cDNA Data
    37
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000036022 Ensembl Gene Model | MGI Sequence Detail 26391 C57BL/6J ±  kb
    transcript ENSMUST00000071023 Ensembl | MGI Sequence Detail 4334 Not Applicable  
    polypeptide ENSMUSP00000069112 Ensembl | MGI Sequence Detail 256 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 37
      cDNA 37

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2147857, MGI:7414058
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 3
      Gene Ontology 1
      Phenotypes 10
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory