9630013K17Rik Gene Detail

Summary

• Symbol
  9630013K17Rik
• Name
  RIKEN cDNA 9630013K17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926133
  NCBI Gene: 78883
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:63855052-63858866 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 39.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926133	lncRNA gene	Chr11:63855052-63858866 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002991	antisense lncRNA gene	Chr11:64103546-64107360 (+)
A/J	MGP_AJ_G0002968	antisense lncRNA gene	Chr11:61714083-61717897 (+)
AKR/J	MGP_AKRJ_G0002949	antisense lncRNA gene	Chr11:63626700-63630514 (+)
BALB/cJ	MGP_BALBcJ_G0002955	antisense lncRNA gene	Chr11:61986767-61990576 (+)
C3H/HeJ	MGP_C3HHeJ_G0002911	antisense lncRNA gene	Chr11:63587198-63591012 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003097	antisense lncRNA gene	Chr11:66071669-66075483 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002637	antisense lncRNA gene	Chr11:58765442-58769371 (+)
CAST/EiJ	MGP_CASTEiJ_G0002881	antisense lncRNA gene	Chr11:63769930-63773742 (+)
CBA/J	MGP_CBAJ_G0002908	antisense lncRNA gene	Chr11:68971195-68975004 (+)
DBA/2J	MGP_DBA2J_G0002915	antisense lncRNA gene	Chr11:61275757-61279571 (+)
FVB/NJ	MGP_FVBNJ_G0002933	antisense lncRNA gene	Chr11:60927241-60931054 (+)
LP/J	MGP_LPJ_G0002990	antisense lncRNA gene	Chr11:64634946-64638760 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002921	antisense lncRNA gene	Chr11:69893805-69897618 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003101	antisense lncRNA gene	Chr11:63791214-63795028 (+)
PWK/PhJ	MGP_PWKPhJ_G0002840	antisense lncRNA gene	Chr11:61879945-61883758 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002786	antisense lncRNA gene	Chr11:63640301-63644114 (+)
WSB/EiJ	MGP_WSBEiJ_G0002911	antisense lncRNA gene	Chr11:63405312-63409125 (+)

Homology

• Gene Tree
  9630013K17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9630013K17Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086359 (Evidence)
• NCBI Gene
  78883

Representative Sequences			Length	Strain/Species
genomic	78883	NCBI Gene Model | MGI Sequence Detail	3815	C57BL/6J
transcript	NR_131111	RefSeq | MGI Sequence Detail	1072	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9630013K17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102108	Chr11:63854716-63854721 (+)	-333 bp
Tssr102109	Chr11:63856897-63856906 (+)	1,850 bp