9130024F11Rik Gene Detail

Summary

• Symbol
  9130024F11Rik
• Name
  RIKEN cDNA 9130024F11 gene
• Synonyms
  EG329160

• Feature Type
  lncRNA gene
• IDs
  MGI:1926150
  NCBI Gene: 329160
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:57010628-57014355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 28.78 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926150	lncRNA gene	Chr1:57010571-57089243 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015099	unclassified non-coding RNA gene	Chr1:56765771-56848735 (+)
A/J	MGP_AJ_G0015072	unclassified non-coding RNA gene	Chr1:54794714-54873073 (+)
AKR/J	MGP_AKRJ_G0015035	unclassified non-coding RNA gene	Chr1:56251464-56334972 (+)
BALB/cJ	MGP_BALBcJ_G0015035	unclassified non-coding RNA gene	Chr1:54828699-54910886 (+)
C3H/HeJ	MGP_C3HHeJ_G0014858	unclassified non-coding RNA gene	Chr1:56544750-56626975 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015492	unclassified non-coding RNA gene	Chr1:59117862-59210089 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013238	unclassified non-coding RNA gene	Chr1:50770394-50852548 (+)
CAST/EiJ	MGP_CASTEiJ_G0014413	unclassified non-coding RNA gene	Chr1:55811485-55894962 (+)
CBA/J	MGP_CBAJ_G0014837	unclassified non-coding RNA gene	Chr1:60804097-60899554 (+)
DBA/2J	MGP_DBA2J_G0014930	unclassified non-coding RNA gene	Chr1:54211390-54290533 (+)
FVB/NJ	MGP_FVBNJ_G0014942	unclassified non-coding RNA gene	Chr1:53538037-53618301 (+)
LP/J	MGP_LPJ_G0015013	unclassified non-coding RNA gene	Chr1:57657864-57747263 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014969	unclassified non-coding RNA gene	Chr1:63861254-63951334 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015530	unclassified non-coding RNA gene	Chr1:56249296-56334554 (+)
PWK/PhJ	MGP_PWKPhJ_G0014205	unclassified non-coding RNA gene	Chr1:53537815-53622865 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013994	unclassified non-coding RNA gene	Chr1:55830347-55915768 (+)
WSB/EiJ	MGP_WSBEiJ_G0014517	unclassified non-coding RNA gene	Chr1:55914261-55997989 (+)

Homology

• Gene Tree
  9130024F11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9130024F11Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  873
• Tissues
  97
• cDNA Data
  11
• Literature Summary
  5

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GENSAT
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000087022 (Evidence)
• NCBI Gene
  329160

Representative Sequences			Length	Strain/Species
genomic	329160	NCBI Gene Model | MGI Sequence Detail	3728	C57BL/6J
transcript	NR_024325	RefSeq | MGI Sequence Detail	3728	Not Specified

Molecular
Reagents

• All nucleic 25

  cDNA 11

  Primer pair 1

  Other 13

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3645280

References

• Summaries
  All 22

  Developmental Gene Expression 5

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for 9130024F11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6736	Chr1:57010610-57010664 (+)	9 bp
Tssr6737	Chr1:57011192-57011203 (+)	570 bp
Tssr6738	Chr1:57011339-57011365 (+)	724 bp
Tssr6739	Chr1:57011714-57011748 (+)	1,103 bp
Tssr6740	Chr1:57013191-57013195 (+)	2,565 bp