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Trappc4 Gene Detail
Summary
  • Symbol
    Trappc4
  • Name
    trafficking protein particle complex 4
  • Synonyms
    1500017G03Rik, HSPC172, PTD009, Sbd, Sbdn, TRS23
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926211
    NCBI Gene: 60409
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:44315057-44318629 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 24.84 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    205 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926211
 protein coding gene Chr9:44314995-44318897 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034707
 protein coding gene Chr9:42889202-42893833 (-)
A/J MGP_AJ_G0034688
 protein coding gene Chr9:41692422-41696207 (-)
AKR/J MGP_AKRJ_G0034614
 protein coding gene Chr9:42554266-42560906 (-)
BALB/cJ MGP_BALBcJ_G0034679
 protein coding gene Chr9:41439555-41443270 (-)
C3H/HeJ MGP_C3HHeJ_G0034390
 protein coding gene Chr9:43012167-43015952 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035200
 protein coding gene Chr9:44163204-44166911 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032115
 protein coding gene Chr9:41270985-41274712 (-)
CAST/EiJ MGP_CASTEiJ_G0033712
 protein coding gene Chr9:42860163-42863571 (-)
CBA/J MGP_CBAJ_G0034362
 protein coding gene Chr9:45757855-45764005 (-)
DBA/2J MGP_DBA2J_G0034521
 protein coding gene Chr9:41594517-41598302 (-)
FVB/NJ MGP_FVBNJ_G0034462
 protein coding gene Chr9:40849201-40852982 (-)
LP/J MGP_LPJ_G0034602
 protein coding gene Chr9:43193375-43197129 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034506
 protein coding gene Chr9:47612304-47616089 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035221
 protein coding gene Chr9:42456323-42460086 (-)
PWK/PhJ MGP_PWKPhJ_G0033418
 protein coding gene Chr9:41467596-41471425 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033252
 protein coding gene Chr9:42778141-42781973 (-)
WSB/EiJ MGP_WSBEiJ_G0033825
 protein coding gene Chr9:42495429-42499215 (-)



Homology
more
  • Human Ortholog
    TRAPPC4, trafficking protein particle complex subunit 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC4, trafficking protein particle complex subunit 4
  • Synonyms
    CGI-104, HSPC172, NEDESBA, PTD009, SBDN, SYNBINDIN, TRS23
  • Links
    NCBI Gene ID: 51399
    neXtProt AC: NX_Q9Y296
    UniProt: Q9Y296

  • Chr Location
    11q23.3; chr11:119018763-119025454 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    27
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    797
  • Tissues
    16
  • cDNA Data
    120
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 60409 NCBI Gene Model | MGI Sequence Detail 3573 C57BL/6J ±  kb
transcript NM_021789 RefSeq | MGI Sequence Detail 951 C57BL/6  
polypeptide Q9ES56 UniProt | EBI | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 121
    cDNA 121

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916212, MGI:2143008
References
more
  • Summaries
    All 39
    Developmental Gene Expression 2
    Gene Ontology 7
    Phenotypes 8
  • Earliest
    J:64997 Ethell IM, et al., Synbindin, A novel syndecan-2-binding protein in neuronal dendritic spines. J Cell Biol. 2000 Oct 2;151(1):53-68
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory