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Cyp39a1 Gene Detail
Summary
  • Symbol
    Cyp39a1
  • Name
    cytochrome P450, family 39, subfamily a, polypeptide 1
  • Synonyms
    oxysterol 7-alpha-hydroxylase
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927096
    NCBI Gene: 56050
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:43978316-44062322 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 19.75 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3393 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927096
 protein coding gene Chr17:43978263-44062322 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023779
 protein coding gene Chr17:44569314-44660771 (+)
A/J MGP_AJ_G0023737
 protein coding gene Chr17:43563922-43644339 (+)
AKR/J MGP_AKRJ_G0023708
 protein coding gene Chr17:43807007-43899819 (+)
BALB/cJ MGP_BALBcJ_G0023741
 protein coding gene Chr17:43454854-43534582 (+)
C3H/HeJ MGP_C3HHeJ_G0023505
 protein coding gene Chr17:44502362-44593251 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024184
 protein coding gene Chr17:46552249-46642415 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021634
 protein coding gene Chr17:40390919-40476262 (+)
CAST/EiJ MGP_CASTEiJ_G0022986
 protein coding gene Chr17:44541192-44637513 (+)
CBA/J MGP_CBAJ_G0023481
 protein coding gene Chr17:48190284-48288758 (+)
DBA/2J MGP_DBA2J_G0023607
 protein coding gene Chr17:42365743-42452076 (+)
FVB/NJ MGP_FVBNJ_G0023574
 protein coding gene Chr17:41928420-42022268 (+)
LP/J MGP_LPJ_G0023688
 protein coding gene Chr17:45235810-45317859 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023603
 protein coding gene Chr17:47835795-47926025 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024229
 protein coding gene Chr17:44157063-44247637 (+)
PWK/PhJ MGP_PWKPhJ_G0022731
 protein coding gene Chr17:41620390-41702689 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022546
 protein coding gene Chr17:41022772-41111908 (+)
WSB/EiJ MGP_WSBEiJ_G0023051
 protein coding gene Chr17:44680120-44769962 (+)



Homology
more
  • Human Ortholog
    CYP39A1, cytochrome P450 family 39 subfamily A member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CYP39A1, cytochrome P450 family 39 subfamily A member 1
  • Links
    NCBI Gene ID: 51302
    neXtProt AC: NX_Q9NYL5
    UniProt: Q9NYL5

  • Chr Location
    6p12.3; chr6:46549580-46652830 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    819
  • Tissues
    110
  • cDNA Data
    9
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000023963 Ensembl Gene Model | MGI Sequence Detail 84007 C57BL/6J ±  kb
    transcript ENSMUST00000170988 Ensembl | MGI Sequence Detail 3053 Not Applicable  
    polypeptide ENSMUSP00000130073 Ensembl | MGI Sequence Detail 470 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 9
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 5
      Gene Ontology 9
      Phenotypes 8
    • Earliest
      J:62589 Li-Hawkins J, et al., Expression cloning of an oxysterol 7alpha-hydroxylase selective for 24-hydroxycholesterol. J Biol Chem. 2000 Jun 2;275(22):16543-9
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory